Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1020 ATGCAGTTCTTTGGAGGGTCGGAGATCAGCCCATTGCCGCCGCTGCCAACAGCATCGGGAAACAATGCCCACATGATGTATGTGTTTAACAGGAATGGGGTGTGCTTGCTTTACAGGGAATGGAATCGCCCTCTTAGGACTCTGAATGCCCAGCAAGACCATAAGCTCATGTTTGGTCTGCTTTTCTCTCTTAAGTCCTTAACAGCTAAGATGGATCCCACTAGTGTGGAGAAGGGAAACCTTGGGGTACCTCAGTTACCTGGCCAGGGATGTTCATTTCATAGCTTTCGTACTAATACGTACAAACTAAGTTTCATGGAAAGTCCATCTGGCATAAAGATTATCTTGGTCACTCATCCTGGAACTGGTGATCTACGGGAATCCCTGAAGTATATCTATAACTTGTATGTTGAATATGTTGTCAAGAATCCGCTCTATTCTCCGGGAACTCCATTCAGGTCTGAGCTATTCGATAAAGCTCTTGATCAATATGTGAGGGGTCTTGGATAG 510 0.4529 MQFFGGSEISPLPPLPTASGNNAHMMYVFNRNGVCLLYREWNRPLRTLNAQQDHKLMFGLLFSLKSLTAKMDPTSVEKGNLGVPQLPGQGCSFHSFRTNTYKLSFMESPSGIKIILVTHPGTGDLRESLKYIYNLYVEYVVKNPLYSPGTPFRSELFDKALDQYVRGLG* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1020 169 Gene3D - 22 168 - -
Vvi16g1020 169 CDD TRAPPC1_MUM2 24 164 - -
Vvi16g1020 169 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 22 167 IPR007233 GO:0016192|GO:0030008
Vvi16g1020 169 FunFam Trafficking particle complex subunit 1 22 169 - -
Vvi16g1020 169 SMART Sybindin_2 23 168 IPR007233 GO:0016192|GO:0030008
Vvi16g1020 169 SUPERFAMILY SNARE-like 24 167 IPR011012 -
Vvi16g1020 169 Pfam Sybindin-like family 24 166 IPR007233 GO:0016192|GO:0030008
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1020 Vvi-Chr16 18484619 18489671 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1020 K20300 - vvi:100266422 351.288