Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1026 ATGGAGAGTGTAGTGTTGTACCCATCACCGGGGATTGGACACCTTATCGCCATGGTTGAGCTTGGGAAGCTCATCCTCAGACACCACCCTTCACTCTCCATCGTCATCTTCTTCCTCGACCCACCTTTTAACACTGGCGCCACCGCCCCTTACATCTCCGCTGTCTCTTCTACCACCCCCTCCATCACCTTCCGCCACCTCCCCATCCCAACTCTTCCTCAACACCTCTCCTCCTACCCCTCTTTTGAGGCCCTAATATTTGATCTCTTAACCCTCAGCAACCCTAATGTCCACCAAGCCCTCCAATCCATCTCTAACACCTCCACCGTCCTCGCTCTCGTCATCGACATGTTCTGCACCCCAGCTCTGGACGTCGCCGGAGAGCTTAACGTTCCGGTCTACTATTTCTTCACTTCCTCCTGCTCCGGCCTCGCTTTGTTCCTTTACTTCCCTACTCTTCACCAGAACATCACTCAGAGTTTCAAGGATATGAACACCCTTCATCAAGCCCCGGGCTTGCCGCCGATACCATCGGAGGATATGCCAACACCGGTGCTTGACCGCACCAGCAAAGCATATGAATCTTTTGTGTATCACACTACCCATATCACGAAATCGGCTGGAATCATAGTGAATTCGTTTGAATCCTTGGAATCAAAAGCTGTGAAGGCTATCAAAGACGGGCTTTGTGTAAGAGACCGTCCTACACCACAGCTGTTCAGCATAGGGCCGTTGATAGCCACACAAAGCGGAGACGGTGGGGGAGATGGAAAAGAGTGTTTAAAGTGGCTGGACTCGCAGCCGAAACGCAGCGTAGTGTTTCTGTGTTTTGGCAGCATGGGTTTCTTTTCAGAAGAGCAGTTGAAGGAAATAGCAGTGGGGCTAGAGACGAGCGGGCGGAGGTTCCTATGGGTGGTGCGCAGTCCACCGTCCAAGGACCAGAGTCAGCGCTTTTTAGCACCACCCGACCCGGATTTGGATTCGCTACTACCAGATGGATTCTTAGATAGAACCAAGGAGAGGGGACTAGTGGTGAAGTCATGGGCTCCACAGGTGGCAGTGCTGAGTCATGGCTCGGTCGGCGGGTTCGTGACTCACTGCGGGTGGAACTCGGTGCTCGAAGCTATCTCCTCCGGCGTGCCCATGGTGGCGTGGCCCCTCTACGCGGAGCAAAGGCTTAACAAAGTTATGATGGTCAAAGAAATGAAGATAGCGTTACCAATGGAGTCGTCAGCCGCAGGACTGGTGACGTCAACAGAGCTCGAGAAGCGAGTCATAGAGTTGATGGAGACTGAGAAAGGATTTTCAATTAGAAATCGCATCACTGCAATGAAAGACGAAGCCAAGGCTGCAATGAGCGATGGAGGGTCATCTCTAGCTGAACTAGACAAGCTGATCAAGTCATGGAGGCAAAAAATGAATCATATTTCTTGA 1434 0.5195 MESVVLYPSPGIGHLIAMVELGKLILRHHPSLSIVIFFLDPPFNTGATAPYISAVSSTTPSITFRHLPIPTLPQHLSSYPSFEALIFDLLTLSNPNVHQALQSISNTSTVLALVIDMFCTPALDVAGELNVPVYYFFTSSCSGLALFLYFPTLHQNITQSFKDMNTLHQAPGLPPIPSEDMPTPVLDRTSKAYESFVYHTTHITKSAGIIVNSFESLESKAVKAIKDGLCVRDRPTPQLFSIGPLIATQSGDGGGDGKECLKWLDSQPKRSVVFLCFGSMGFFSEEQLKEIAVGLETSGRRFLWVVRSPPSKDQSQRFLAPPDPDLDSLLPDGFLDRTKERGLVVKSWAPQVAVLSHGSVGGFVTHCGWNSVLEAISSGVPMVAWPLYAEQRLNKVMMVKEMKIALPMESSAAGLVTSTELEKRVIELMETEKGFSIRNRITAMKDEAKAAMSDGGSSLAELDKLIKSWRQKMNHIS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1026 477 FunFam Glycosyltransferase 258 453 - -
Vvi16g1026 477 Gene3D Glycogen Phosphorylase B; 258 453 - -
Vvi16g1026 477 FunFam Glycosyltransferase 4 252 - -
Vvi16g1026 477 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 257 425 IPR002213 GO:0008194
Vvi16g1026 477 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 469 - -
Vvi16g1026 477 CDD GT1_Gtf-like 4 462 IPR002213 GO:0008194
Vvi16g1026 477 ProSitePatterns UDP-glycosyltransferases signature. 348 391 IPR035595 -
Vvi16g1026 477 Gene3D Glycogen Phosphorylase B; 4 458 - -
Vvi16g1026 477 PANTHER GLYCOSYLTRANSFERASE 3 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1026 Vvi-Chr16 18554821 18556254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1026 2 472 Glycosyltransferase AT3G16520 50.947 6.26e-163 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1026 - - vvi:100254171 937.176