Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1023 ATGGAGAGTGTAGTAGTATTGTATCCATCGCCAGGGATGGGTCACCTGGTCTCAATGGTGGAGCTTGGAAAGCTTATATTGAAACACCATCCTTCATTCTCCATCATCATCTTCATCGTAACCCCACCTTACAACACTGGCTCTACCGCTCCTTACATCGCCCGCGTCTCCTCTTCCACTCCTTCCATCACCTTCCACCACCTCCCCACCATCTCTCTCCCTCTCGATTCTTTCTCCTCGCCCAACCATGAAACCCTTACTTTCGAGCTCCTCCACCTCAACAACCATAACGTCCACCAGGCCCTTGTGTCCATCTCCAACAATTCAACTGTCAGTGCCCTTATCATCGACTTCTTCTGCACTTCTGCTCTTTCCGTCGCTAATGAACTCAGCATCTCATGCTATTATTTCTTCACCTCCGGTGCTAATTGCCTGGCTTGCTTTGCTTATTTGCACACTATTCACCAGAATACCTCCAAAAGCTTCAAAGAACTCAACACCCACATTCATATCCCAGGTCTACCGCCGATACCAGCCTCTGACATGGCGAAACCAATACTTGACAGAACAGATAAGGCCTATGAGTTCTTCCTAGACATGTCCTTCCACTTGCCCAAATCAGCTGGAATCATTGTGAACACATTTGAAGTGCTGGAAGCCAGAGCCTTGAAAGCGATCTCGGATGGACTTTGTGACCCACAGAGTCCAACCCCACCGATTTTCTGTATTGGACCATTGATCGCAGCTGATGATCGTCTCGGCGGTGACATGCCCGAGTGTCTGACATGGCTCGACTCACAGCCGAAGCGCAGTGTCTTGTTCCTGTGTTTTGGTAGCCTAGGCGTATTCTCAGCAGAACAGTTGAAGGAAATAGCGATTGGGTTGGAGAGGAGTGGGCAGAGGTTCTTGTGGGTGGTCCGCAGTCCACCAAATGAGGACCAAAGCAAGCGCTTCTTAGCACCACCAGACCCAGATTTGGATTTGCTCCTCCCAGACGGGTTCTTGGATCGAACCAAGGAGAGGGGCCTAGTGGTGAAGTCATGGGCACCTCAAGTGGCAGTTTTGAATCATGAATCAGTAGGCGGGTTTGTAACTCACTGTGGGTGGAACTCTTTGCTTGAAGCCTTATGTGCGGGCGTACCAATGGTAGCGTGGCCACTATATGCCGAGCAAAGATTTAATAGGGTCATACTAGTTGAGGAGATGAAGCTAGCGTTGCCAATGGAAGAGTTGGAAGATGGGTTTGTGAAGGCAAGCGAGATTGAGAAGCGAGCTAGACAGCTGATGGAATCAGAGGAAGGAAAGTCGATTAGGAATCAGATCATGGTAATGAAAGAAGCTGCTGAGGCTGCAATGAGCGATGGTGGATCATCTCGCGTTGCATTAATGAAATTGGTCCAATCGTGGAATTGA 1413 0.4926 MESVVVLYPSPGMGHLVSMVELGKLILKHHPSFSIIIFIVTPPYNTGSTAPYIARVSSSTPSITFHHLPTISLPLDSFSSPNHETLTFELLHLNNHNVHQALVSISNNSTVSALIIDFFCTSALSVANELSISCYYFFTSGANCLACFAYLHTIHQNTSKSFKELNTHIHIPGLPPIPASDMAKPILDRTDKAYEFFLDMSFHLPKSAGIIVNTFEVLEARALKAISDGLCDPQSPTPPIFCIGPLIAADDRLGGDMPECLTWLDSQPKRSVLFLCFGSLGVFSAEQLKEIAIGLERSGQRFLWVVRSPPNEDQSKRFLAPPDPDLDLLLPDGFLDRTKERGLVVKSWAPQVAVLNHESVGGFVTHCGWNSLLEALCAGVPMVAWPLYAEQRFNRVILVEEMKLALPMEELEDGFVKASEIEKRARQLMESEEGKSIRNQIMVMKEAAEAAMSDGGSSRVALMKLVQSWN* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1023 470 PANTHER GLYCOSYLTRANSFERASE 5 469 - -
Vvi16g1023 470 Gene3D Glycogen Phosphorylase B; 5 458 - -
Vvi16g1023 470 CDD GT1_Gtf-like 5 451 IPR002213 GO:0008194
Vvi16g1023 470 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 263 396 IPR002213 GO:0008194
Vvi16g1023 470 FunFam Glycosyltransferase 5 248 - -
Vvi16g1023 470 ProSitePatterns UDP-glycosyltransferases signature. 348 391 IPR035595 -
Vvi16g1023 470 Gene3D Glycogen Phosphorylase B; 258 453 - -
Vvi16g1023 470 FunFam Glycosyltransferase 258 453 - -
Vvi16g1023 470 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1023 Vvi-Chr16 18525704 18527116 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1023 2 470 Glycosyltransferase AT3G16520 54.526 6.96e-171 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1023 - - vvi:100250976 931.398