Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g1022 ATGAAGAACACCATTGTTCTGTATCCTTCTTCAGGTTTAAGCCACCTTGTTCCCATGGTAGAGATTGGCCGACTCCTGCTCGCTAACTACCCTTCCTTTTCCATCACCATCCTCATTGCCACCCTACCTTCTGACACCGCCTCCACTGCCACATACATCGCTTCCATTGCTGCCACCACCCCTTCCATTTCCTTCTACCACCTCCCCACTGTTTCTTTTTCCAACCCGTCCGGTTTTCCAGCTCTATTCTTTGAATTTATAACCCTTAACAACAATAATCTCCGTCAAACCCTAGAATCCATGTCCCAGACCTCAAGTATTAAAGCCTTCATCATCGACTTCTTCTGCAATACCTCTTTCGAAATTTCGGCAAATCTTAACATCCCAACATACTATTTGTGTACTTCAGGGGCAAATGGGCTTGCGATGTTCCTTTACCTCCCAACGATTGATAGACACATTACAAAAAGCTTGAAAGATGATCTCAACATGCATATCCATGTCCCGGGAACACCATCCATTGCAGCTTCTGACATGCCCTTGGCGTTGCTTGATCGCAGGACTGAAGTCTATCAATACTTCATTGACACCGGAAATCAGATGGCTAGATCATCTGGAATCATCATAAACACTTTTGAATCGCTTGAACCAAGAGCTATTAAAGCGATATCAGAGTGCTTCTGCGTTCCAGATGCACCGACTCCTCCAATTTTCTGCATCGGGCCATTGGTCTTGAATTCGAATCGAGCTGGTGGTGGCGGTGATGAACATGACTGCTTGGGCTGGCTCAATATGCAGCCAAGTCGAAGCGTCGTGTTTCTGAGTTTTGGTAGCATGGGGTTGTTCTCATCGGAGCAGTTGAAGGAAATCGCAACTGGGCTAGAAAGAAGTGGAGTGAGGTTCTTGTGGGTGGTGCGGATGGAGAAGCTCAATGGAGAAACACCTCAGCCAAGCTTGGATTCATGCTTGCCAGAAGGGTTCTTGGAGAGAACGAAAGATAGAGGTTATCTGGTGAAGTCTTGGGCACCACAGGTGGCGGTGCTGAGTCATGACTCGGTTGGCGGGTTTGTGACTCATTGCGGGTGGAATTCGATTCTGGAATCTGTGTGTGCTGGAGTGCCTATGGTGGCATGGCCTCTGTATGCAGAGCAAAAGATGAACAGGGTGATCTTGGTGGAGGAATTCAAGGTCGCTTTGCCGGTGAACCAGTTGGAAAACGATTTTGTGACTGCGACTGAGTTGGAGAACCGAGTGACCGAGTTGATGAATTCCGACAAAGGAAAAGCGTTGAGAGACCGAGTTATAGCCATGAGAGATGGTGCCAAGGCGGCCATGAGAGAGGACGGATCATCTCGGCTTGCACTAGCCAAGTTGGTTGAGTTAATTACACGAGCTCCACCGACTTGA 1407 0.4805 MKNTIVLYPSSGLSHLVPMVEIGRLLLANYPSFSITILIATLPSDTASTATYIASIAATTPSISFYHLPTVSFSNPSGFPALFFEFITLNNNNLRQTLESMSQTSSIKAFIIDFFCNTSFEISANLNIPTYYLCTSGANGLAMFLYLPTIDRHITKSLKDDLNMHIHVPGTPSIAASDMPLALLDRRTEVYQYFIDTGNQMARSSGIIINTFESLEPRAIKAISECFCVPDAPTPPIFCIGPLVLNSNRAGGGGDEHDCLGWLNMQPSRSVVFLSFGSMGLFSSEQLKEIATGLERSGVRFLWVVRMEKLNGETPQPSLDSCLPEGFLERTKDRGYLVKSWAPQVAVLSHDSVGGFVTHCGWNSILESVCAGVPMVAWPLYAEQKMNRVILVEEFKVALPVNQLENDFVTATELENRVTELMNSDKGKALRDRVIAMRDGAKAAMREDGSSRLALAKLVELITRAPPT* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g1022 468 Gene3D Glycogen Phosphorylase B; 5 451 - -
Vvi16g1022 468 PANTHER GLYCOSYLTRANSFERASE 4 461 - -
Vvi16g1022 468 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 255 425 IPR002213 GO:0008194
Vvi16g1022 468 FunFam Glycosyltransferase 257 446 - -
Vvi16g1022 468 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 464 - -
Vvi16g1022 468 CDD GT1_Gtf-like 5 454 IPR002213 GO:0008194
Vvi16g1022 468 Gene3D Glycogen Phosphorylase B; 256 446 - -
Vvi16g1022 468 ProSitePatterns UDP-glycosyltransferases signature. 341 384 IPR035595 -
Vvi16g1022 468 FunFam Glycosyltransferase 5 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g1022 Vvi-Chr16 18520803 18522209 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g1022 2 460 Glycosyltransferase AT3G16520 49.787 7.72e-150 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g1022 - K12938 vvi:100247310 910.598