Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0991 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0992 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0993 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0994 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0995 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0996 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0997 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0998 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0999 . . . . . Adu04g02791 . . . . . . . . . . . . . . . Arst4g03683 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01361 . Lasa3g00167 . . . . . . . . . . . . . Mepo3g00123 . . . . . . . Phac8g00603 . Phco3g02805 . . . . . Pste5g00914 . . . . . Pumo5g00015 . Pvu8g0435 . Rops8g00723 . Seca2g00669 . . . . . . . . . Trre13g00150 . . . Vian2g00405 . . . Vimu6g00842 . Viun5g00603 . . . .
Vvi1g1000 . . . . . Adu04g02792 . . . . . . . . . . . . . . . Arst4g03685 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01360 . Lasa3g00168 . . . . . . . . . . . . . Mepo3g00124 . Mesa25g04704 . . . . . Phac8g00602 . Phco3g02806 . . . . . Pste5g00913 . . . . . Pumo5g00014 . Pvu8g0434 . Rops8g00722 . Seca2g00663 . Spst1g01305 . . . . . . . Trre13g00151 . . . Vian2g00404 . Vifa1g00158 . Vimu6g00844 . Viun5g00602 . Vivi6g00228 . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0991 Chr1 11067575 11068294 +
Vvi Vvi1g0992 Chr1 11082599 11082841 -
Vvi Vvi1g0993 Chr1 11114201 11117493 +
Vvi Vvi1g0994 Chr1 11124690 11127252 +
Vvi Vvi1g0995 Chr1 11141675 11142394 +
Vvi Vvi1g0996 Chr1 11156174 11156422 +
Vvi Vvi1g0997 Chr1 11159793 11160512 +
Vvi Vvi1g0998 Chr1 11163495 11164214 +
Vvi Vvi1g0999 Chr1 11184010 11186116 +
Adu Adu04g02791 Chr04 115722540 115733003 +
Arst Arst4g03683 Chr4 115700587 115711327 +
Lapu Lapu1g01361 Chr1 26409603 26412195 +
Lasa Lasa3g00167 Chr3 12573568 12575439 -
Mepo Mepo3g00123 Chr3 1643455 1646376 -
Phac Phac8g00603 Chr8 3862336 3863982 +
Phco Phco3g02805 Chr3 54454266 54456305 -
Pste Pste5g00914 Chr5 5961590 5976672 +
Pumo Pumo5g00015 Chr5 1324382 1335172 -
Pvu Pvu8g0435 Chr8 3700490 3702932 +
Rops Rops8g00723 Chr8 15086093 15090673 +
Seca Seca2g00669 Chr2 10020343 10025780 +
Trre Trre13g00150 Chr13 1154181 1157491 +
Vian Vian2g00405 Chr2 4673797 4675699 +
Vimu Vimu6g00842 Chr6 9310606 9314174 -
Viun Viun5g00603 Chr5 3658237 3660738 -
Vvi Vvi1g1000 Chr1 11205576 11207549 +
Adu Adu04g02792 Chr04 115734368 115746187 +
Arst Arst4g03685 Chr4 115712494 115719283 +
Lapu Lapu1g01360 Chr1 26398992 26403058 -
Lasa Lasa3g00168 Chr3 12585521 12587761 -
Mepo Mepo3g00124 Chr3 1663603 1668117 +
Mesa Mesa25g04704 Chr25 85770373 85774792 -
Phac Phac8g00602 Chr8 3862336 3865289 +
Phco Phco3g02806 Chr3 54464298 54468427 +
Pste Pste5g00913 Chr5 5941707 5947377 -
Pumo Pumo5g00014 Chr5 1314007 1319982 -
Pvu Pvu8g0434 Chr8 3689378 3693416 -
Rops Rops8g00722 Chr8 15040263 15043225 +
Seca Seca2g00663 Chr2 9960377 9964797 +
Spst Spst1g01305 Chr1 15859102 15863314 +
Trre Trre13g00151 Chr13 1160152 1163507 +
Vian Vian2g00404 Chr2 4666675 4669406 -
Vifa Vifa1g00158 Chr1 24446030 24446488 -
Vimu Vimu6g00844 Chr6 9324263 9327480 +
Viun Viun5g00602 Chr5 3655578 3658159 +
Vivi Vivi6g00228 Chr6 5291965 5294038 -
Adu Adu04g02791 Chr04 115722540 115733003 +
Arst Arst4g03683 Chr4 115700587 115711327 +
Lapu Lapu1g01361 Chr1 26409603 26412195 +
Lasa Lasa3g00167 Chr3 12573568 12575439 -
Mepo Mepo3g00123 Chr3 1643455 1646376 -
Phac Phac8g00603 Chr8 3862336 3863982 +
Phco Phco3g02805 Chr3 54454266 54456305 -
Pste Pste5g00914 Chr5 5961590 5976672 +
Pumo Pumo5g00015 Chr5 1324382 1335172 -
Pvu Pvu8g0435 Chr8 3700490 3702932 +
Rops Rops8g00723 Chr8 15086093 15090673 +
Seca Seca2g00669 Chr2 10020343 10025780 +
Trre Trre13g00150 Chr13 1154181 1157491 +
Vian Vian2g00405 Chr2 4673797 4675699 +
Vimu Vimu6g00842 Chr6 9310606 9314174 -
Viun Viun5g00603 Chr5 3658237 3660738 -
Adu Adu04g02792 Chr04 115734368 115746187 +
Arst Arst4g03685 Chr4 115712494 115719283 +
Lapu Lapu1g01360 Chr1 26398992 26403058 -
Lasa Lasa3g00168 Chr3 12585521 12587761 -
Mepo Mepo3g00124 Chr3 1663603 1668117 +
Mesa Mesa25g04704 Chr25 85770373 85774792 -
Phac Phac8g00602 Chr8 3862336 3865289 +
Phco Phco3g02806 Chr3 54464298 54468427 +
Pste Pste5g00913 Chr5 5941707 5947377 -
Pumo Pumo5g00014 Chr5 1314007 1319982 -
Pvu Pvu8g0434 Chr8 3689378 3693416 -
Rops Rops8g00722 Chr8 15040263 15043225 +
Seca Seca2g00663 Chr2 9960377 9964797 +
Spst Spst1g01305 Chr1 15859102 15863314 +
Trre Trre13g00151 Chr13 1160152 1163507 +
Vian Vian2g00404 Chr2 4666675 4669406 -
Vifa Vifa1g00158 Chr1 24446030 24446488 -
Vimu Vimu6g00844 Chr6 9324263 9327480 +
Viun Viun5g00602 Chr5 3655578 3658159 +
Vivi Vivi6g00228 Chr6 5291965 5294038 -