Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00404 ATGGCAAAATTCGAGCAAATCACATGTTTTATAATTTTCATGCTTGTAATATGCCTACTAACAAGTTCATTATCCGAAGCTTCTCATTTTCAGGAAAAGACACAAAACTGGTTAAACCATGGTGGGGATATATACAACAGAAGATATGCCAGCATGGAACAGAAGATCAGCGTTGAAACTGTTTCGAACTTGAGTTTGAAGTGGAAGTTCGAAGCGGGCAAAGACATAACTGCAACTCCAGCTATTTTCGATGGCATACTCTACTTTCCATCGTGGAATGGAGAGCTTTATGCGGTGAGAACAGGAGATGGATCTCTGGTGTGGAAGCAGAACTTGCAGAATCTAACGGGGCTAAGTGCAACAGGGTTTGTACCAGGTGTTAACTGGACTGTGTCAAGAGCAACACCAACTATAGCAGACGATGATGTTCTGTTGGTCGGAATATATGGTCCTGCACTTGTTATTGCTCTCAAAAGATCAACAGGAGAGTTAGTTTGGAAGACACGTTTGGACAGTCATAACACAAGTGCTATCACCATGTCTGGAACCTACTACAACGGGGCTTTTTATGTTGGGACATCTTCACAAGAAGAAATTCTGACACCTGAAGAATGTTGCACCTTTCGAGGAAGCTTCTCAAAGCTAGATGTTAAATCTGGTGCTATTTTGTGGCAAACCTTCATGGTACCTGATAATCATGGAAAAAAAGGAGAATATGCTGGAGCAGCTGTATGGGGAAGTAGCCCTTCCATCGATGCATCAAGGAACCATATATATATTGCCACTGGAAACTTGTATTCTGCCCCTTTGGAAATACGTCAATGTCAAGAAAAAGAAAATAATGCAACACGACCCACTCACCCTGATGATTGTGTTGAGCCGGAAAATCACTCTGATTCAATCCTTGCACTTGACTTGGATGATGGAAAAATCGAATGGTACCACCAATTCGGAGGGTACGATGTTTGGTTCCTTTCATGCAGCAATTTGTCAACACCTAATTGTCCACCTGGTCCTAACCCAGATGCTGATTTTGGGGAGGCACCAATCATTCTCACAATCGATGTCAACAAAACAAAACACGATGTTGTTGTTGCTGTGCAAAAGAGTGGTTTTGCTTGGGCTTTGCACCGTGATGACGGCAAGCTAATTTGGTCCACGGAAGCTGGACCAGGAGGAGTTGCAGGAGGTGGAACATGGGGAGCAGCGAGTGACATAGAAAGGGTTTATACTAACATTGCTAATTCTGATCACAAGAACTTCACCCTCAGACCATCGAAGAAGACTACAAGAAGTGGAGGGTGGGTAGCAATGGAGGCAAAGAGTGGGAAGATCTTGTGGTCCACAGAAAACCCTAGTAATGCCTCTTCTTATGGTCCTGTTTCTGTAGCTAATGGCATTGTGTTTGCAGGATCCGTAGATGTCAAAGGACCTATTTATGCAATTAACGCTGAGACTGGTAGTATTGTGTGGTCGTATGAGACAGGATCATCGGTGTACGGTGGCTTGTCTGTCAGTGATGGGTGCATATATGTTGGAAATGGATATAAGATAGGCTTTGGATTGTTTCTTGGAAATTATACTGCTGGAACTTCGCTTTTTGCCTTTTGTGTCTAA 1617 0.4317 MAKFEQITCFIIFMLVICLLTSSLSEASHFQEKTQNWLNHGGDIYNRRYASMEQKISVETVSNLSLKWKFEAGKDITATPAIFDGILYFPSWNGELYAVRTGDGSLVWKQNLQNLTGLSATGFVPGVNWTVSRATPTIADDDVLLVGIYGPALVIALKRSTGELVWKTRLDSHNTSAITMSGTYYNGAFYVGTSSQEEILTPEECCTFRGSFSKLDVKSGAILWQTFMVPDNHGKKGEYAGAAVWGSSPSIDASRNHIYIATGNLYSAPLEIRQCQEKENNATRPTHPDDCVEPENHSDSILALDLDDGKIEWYHQFGGYDVWFLSCSNLSTPNCPPGPNPDADFGEAPIILTIDVNKTKHDVVVAVQKSGFAWALHRDDGKLIWSTEAGPGGVAGGGTWGAASDIERVYTNIANSDHKNFTLRPSKKTTRSGGWVAMEAKSGKILWSTENPSNASSYGPVSVANGIVFAGSVDVKGPIYAINAETGSIVWSYETGSSVYGGLSVSDGCIYVGNGYKIGFGLFLGNYTAGTSLFAFCV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00404 538 SMART ire1_9 249 316 IPR018391 -
Vian2g00404 538 SMART ire1_9 136 169 IPR018391 -
Vian2g00404 538 SMART ire1_9 181 227 IPR018391 -
Vian2g00404 538 SMART ire1_9 80 111 IPR018391 -
Vian2g00404 538 SMART ire1_9 460 494 IPR018391 -
Vian2g00404 538 Pfam PQQ-like domain 68 313 IPR002372 -
Vian2g00404 538 Pfam PQQ-like domain 434 512 IPR002372 -
Vian2g00404 538 Gene3D - 22 512 - -
Vian2g00404 538 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 34 501 IPR011047 -
Vian2g00404 538 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 9 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00404 Vian-Chr2 4666675 4669406 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00404 - - gmx:100791552 917.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian2g00404 2 4666675 4669406 Vian2g00404 2 4666675 4669406 ECH