Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02806 ATGGCACAATTCGAGCAAATCACCTGTTTTATAATTTCCATGCTTCTAATATGTCTGCTAACATGTTCATTATCCGAAGGTTCTGATGACATATTCACCTCAACAGAAAACACACAAAACTGGTTAAACCATGGTGGGGATATATACAACAGAAGATATGCCAGCATGGAGCACAAGATCAGCGTTGAAACTGTTTCCAACTTAAGTTTGAAGTGGAAGTTCAACGCAGGCAAAGACATAACTGCAACTCCAGCTATTTTTGATGGCGTACTCTACTTTCCATCGTGGAATGGAGACATTTTTGCGGTGAGAACACAAGATGGATCTCTGGTGTGGAGGCAGAACTTGCAGAATCTAACGAGGCTAAGTGCAACAGGGTTTGTGGCAGGTGTTAACTGGACAGTGGCAAGAGCAACACCAACTATAGCAGAAGATGATCTTCTGGTGGTTGGAATATATGGTCCTGCAGTTGTTATTGCTGTGAAAAGATCAACAGGAGAGTTGGTTTGGAAGACACGTTTGGACAGCCATAACTCAAGTATTATCACCATGTCTGGAACCTACTACAAAGGGGCTTTCTATGTCGGGACATCTTCACTAGAAGAAATTATCACATCTGAAGAATGTTGCACCTTTCGAGGAAGCTTCTCAAAGCTAGATATTAAATCTGGTGTGATTTTGTGGCAAACCTTCATGCTACCTGATAATCATGGAAAAAAAGGAGAATATGCTGGAGCAGCCATATGGGGAAGTAGCCCTTCCATTGATGCATCAAGGAACCATATATATATTGCCACTGGAAACTTGTATTCTGCCCCTTTGAACATACTTGAATGTCAAGAAAGAGAAAATAATGCAACACAACCCACTCATCCTGATCAGTGTGTTGAGCCAGACAATCACTCTGATTCATTCCTTGCACTTGACTTGGATGATGGAAAAATCAAATGGTACCACCAATTGGGAGGGTATGATGTGTGGCTCCTTTCATGCCGCAATTTGTCAACACCTAATTGTCCACCTGGTCCTAACCCAGATGCTAATTTTGGAGAGGCACCAATGATGCTCACAATTGATGTCAACAAAACAAAACAAGATGTTGTTGTTGCTGTTCAAAAGAGTGGTTTTACTTGGGCTTTGCACCGTCATGACGGCAAGCTGATATGGTCTACGGAAGCTGGACCCGGAGGAGTTGCAGGAGGTGGAACATGGGGAGCAGCCACTGACAAAGAAAGGGTGTATACTAACATTGTTAATTCGGATGGCAAGAACTTCATCCTTAGACCATCGAACAAGACTACGAGAACAGGAGGGTGGGTTGCAATGGAGGGAAAGAGTGGGAAGATCTTGTGGTCCACAGAAAACCCTAGTAATGCGAATGCTTATGGTCCTGTTACTGTAGCTAATGGCATTGTGTTTGCAGGATCCGTAGATTCAAAAGGACCTATTTATGCAATTAACGCTGAGAGTGGCAACATTGTATGGTCATATGAGACTGGATCAACAGTGTATGGTGGCATGTCTGTGAGTGATGGGTGCATATATGTTGGAAATGGATACAAGGTAGGCATTGGATTGAATCTTGGAAATTATACTGCTGGAACTTCGCTTCTTGCCTTTTGTGTCTAA 1629 0.4279 MAQFEQITCFIISMLLICLLTCSLSEGSDDIFTSTENTQNWLNHGGDIYNRRYASMEHKISVETVSNLSLKWKFNAGKDITATPAIFDGVLYFPSWNGDIFAVRTQDGSLVWRQNLQNLTRLSATGFVAGVNWTVARATPTIAEDDLLVVGIYGPAVVIAVKRSTGELVWKTRLDSHNSSIITMSGTYYKGAFYVGTSSLEEIITSEECCTFRGSFSKLDIKSGVILWQTFMLPDNHGKKGEYAGAAIWGSSPSIDASRNHIYIATGNLYSAPLNILECQERENNATQPTHPDQCVEPDNHSDSFLALDLDDGKIKWYHQLGGYDVWLLSCRNLSTPNCPPGPNPDANFGEAPMMLTIDVNKTKQDVVVAVQKSGFTWALHRHDGKLIWSTEAGPGGVAGGGTWGAATDKERVYTNIVNSDGKNFILRPSNKTTRTGGWVAMEGKSGKILWSTENPSNANAYGPVTVANGIVFAGSVDSKGPIYAINAESGNIVWSYETGSTVYGGMSVSDGCIYVGNGYKVGIGLNLGNYTAGTSLLAFCV 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02806 542 Pfam PQQ-like domain 434 516 IPR002372 -
Phco3g02806 542 Pfam PQQ-like domain 72 317 IPR002372 -
Phco3g02806 542 SMART ire1_9 253 320 IPR018391 -
Phco3g02806 542 SMART ire1_9 185 231 IPR018391 -
Phco3g02806 542 SMART ire1_9 84 115 IPR018391 -
Phco3g02806 542 SMART ire1_9 464 498 IPR018391 -
Phco3g02806 542 SMART ire1_9 140 173 IPR018391 -
Phco3g02806 542 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 36 506 IPR011047 -
Phco3g02806 542 Gene3D - 25 519 - -
Phco3g02806 542 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 13 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02806 Phco-Chr3 54464298 54468427 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02806 3 54464298 54468427 Phco3g02806 3 54464298 54468427 ECH