Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g00603 ATGCATTCAGTTCTTTTTTCACTGTTGGTTTGTGCTTATGCAGTAGCAGTTTTTGCAGCAACTTCAGATTGGGAAGGACAAGAATCACAAGACTGGTTAAACCATGGTGGAGATTTGTTGAACAGGAGATATGCTTACAAAGAGCGTAAGATCAGTCCAGAAACAGCACCGAACCTACGTTTGAAGTGGAAATTCTATGCAGGCAAAGATATTACTGCAACACCAGCCATATATGACGGCACCCTTTATTTTCCAAGCTGGAATGGTAACATCTACGCAGTTAAAGAAGGCGATGGATCTCTTGTTTGGAAGCAGAACTTGCAGATTCTGACAGGTCTAAAAGCAACGGGCTTGATTCAGAATGTAAATTGGACAGTGTCAAGGTCAACTCCCACTGTTGCTGGGGATTTATTGATTGTTGGAATCTATGGCCCTGCCGTTGTTATTGGTGTCAGAAGAACAAATGGTGAACTTGTGTGGAAGACCACTTTGGATAATCATCCTGCAGCACTCATCACCATGTCTGGGACATTTTACAACGGGAGTTACTATGTTGGAACATCTTCACTTGAAGAAGGCGCAACCATTGAACAATGCTGTGTATTTCGTGGAAGTTTTACAAAACTTGATGTTCAATCTGGTGCCATCTTGTGGAAGACCTATGTGTTACCAGATAACAATAACACTAGAGGAAATTATGCAGGCGCTGCCATTTGGGGAAGCAGCCCCTCCATTGATGTTTATAGAAACCATGTCTATATTGCTACCGGAAACCTCTATTCTGCCCCATCACACATACTTCAATGTCAAGAAAGACAACAGAATCAAACTAAGCCTACTCAACCAGATGAGTGTGTTGAGCCAGAAAATCACTCCAATTCAATCTTGGCCCTTGATTTGAACTCTGGCAACATTACATGGTTCCGCCAATTAGGAGGCTATGATGTGTGGTTTTTTGCATGCACCAATGCTTCAACTCCTAATTGTCCTCCTTCAGGTCCTACCCCAGATGCTGATTTTGGAGAGGCACCAATGATGCTGACAGCATATGTAAATGGTTCCAAAAAAGATATGGTTGTTGCTGTTCAGAAAAGTGGCTTTGCTTGGGCTTTAGATCGCAACAATGGCAGTCTCATTTGGTTTACGGAAGCTGGACCCGGTGGGTTTGCAGGAGGTGGAACATGGGGTGCAGCAACCGATGAAAGGAGAGTTTACACCAATATTGCAAACTCTGAGGCCAAAAATTTTACTCTTGCACCATTAAATATAACTACAACCACTGGTGGATGGGTGGCAATGGATTCAAACAAAGGTAAAATTCTATGGTCTACCGCAAACCCTAGTAATAGCACTGCTAATGGTCCTGTTAGTGTTGCAAATGAGGTTGTCTTTGCTGGATCAACTGATAGAATGGGATCCATTTATGCAATTAACGCAAAGAGTGGGAAGATTTTGTGGTCCTACAAAACAGGAGCCAGTGTCTATGGAGGCATGTCAATTGACAACGGTTGCATATATGTGGGTCATGGATATAATGTAGGTCTAGGGTTTGCCACAAACTTAACTGGGGGAACTTCACTCTTTGCCTTCTGTGTCTGA 1599 0.429 MHSVLFSLLVCAYAVAVFAATSDWEGQESQDWLNHGGDLLNRRYAYKERKISPETAPNLRLKWKFYAGKDITATPAIYDGTLYFPSWNGNIYAVKEGDGSLVWKQNLQILTGLKATGLIQNVNWTVSRSTPTVAGDLLIVGIYGPAVVIGVRRTNGELVWKTTLDNHPAALITMSGTFYNGSYYVGTSSLEEGATIEQCCVFRGSFTKLDVQSGAILWKTYVLPDNNNTRGNYAGAAIWGSSPSIDVYRNHVYIATGNLYSAPSHILQCQERQQNQTKPTQPDECVEPENHSNSILALDLNSGNITWFRQLGGYDVWFFACTNASTPNCPPSGPTPDADFGEAPMMLTAYVNGSKKDMVVAVQKSGFAWALDRNNGSLIWFTEAGPGGFAGGGTWGAATDERRVYTNIANSEAKNFTLAPLNITTTTGGWVAMDSNKGKILWSTANPSNSTANGPVSVANEVVFAGSTDRMGSIYAINAKSGKILWSYKTGASVYGGMSIDNGCIYVGHGYNVGLGFATNLTGGTSLFAFCV 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g00603 532 SMART ire1_9 244 310 IPR018391 -
Viun5g00603 532 SMART ire1_9 131 163 IPR018391 -
Viun5g00603 532 SMART ire1_9 175 221 IPR018391 -
Viun5g00603 532 SMART ire1_9 75 106 IPR018391 -
Viun5g00603 532 SMART ire1_9 455 489 IPR018391 -
Viun5g00603 532 SMART ire1_9 417 445 IPR018391 -
Viun5g00603 532 Pfam PQQ-like domain 430 509 IPR002372 -
Viun5g00603 532 Pfam PQQ-like domain 71 307 IPR002372 -
Viun5g00603 532 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 28 497 IPR011047 -
Viun5g00603 532 Gene3D - 15 507 - -
Viun5g00603 532 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 9 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g00603 Viun-Chr5 3658237 3660738 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g00603 - - gmx:102669135 846.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g00603 5 3658237 3660738 Viun5g00603 5 3658237 3660738 ECH