Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00844 ATGACAAAGTTCGAGCAAATCACATGTTTTATAGTTTCCATGCTTGTAATATGCCTACTAACAAGTTCATTATCGGAAGCTTCTCATGAAAATACACAAAACTGGTTAAACCATGGTGGGGATATATACAACAGAAGATATGCCAGCAAGGAGCAGAAGATCAGCGTTGAAACTGTTTCGAACTTAAGTTTGAAGTGGAAGTTCGAAGCGGGCAAAGACATAACTGCAACTCCAGCTATTTTTGATGGCATACTCTACTTTCCGTCGTGGAATGGAGAGCTTTATGCGGTGAGAACAGGAGATGGATCTCTGGTGTGGAAGCAGAACTTGCAGAATCTAACGGGGCTAAGTGCAACAGGGTTTGTACCAGGTGTTAACTGGACTGTGTCAAGAGCAACACCAACTATAGCAGACGATGATGTTCTGTTGGTCGGAATATATGGTCCTGCACTTGTTATTGCTGTGAAAAGATCAACAGGAGAGTTAGTTTGGAAGACACGTTTGGACAGTCATAACACTAGTGCTATCACCATGTCTGGAACCTACTACAACGGGGCTTATTATGTTGGGACATCTTCACAAGAAGAAATTCTGACACCTGAAGAATGTTGCACCTTTCGAGGAAGCTTCTCAAAGCTAGATGTTAAATCTGGTGCTATTTTGTGGCAAACCTTCATGGTACCTGACAATCATGGAAAAAAAGGAGAATATGCTGGAGCAGCTGTATGGGGAAGCAGCCCTTCCATCGATGCATCAAGGAACCATATATATATTGCCACTGGAAACTTGTATTCTGCCCCTTTGGAAATACGTCAATGTCAAGAAAAAGAAAATAATGCAACACGACCCACTCACCCTGATGAGTGTGTTGAGCCAGAAAATCACTCTGATTCAATCCTTGCACTTGACTTGGATGATGGAAAAATCAAATGGTACCACCAATTCGGAGGGTACGATGTGTGGTTCCTTTCATGCAGCAATTTGTCAACACCTAATTGTCCACCTGGTCCTAACCCAGATGCTGATTTTGGGGAGGCACCAATCATTCTCACAATCCATGTCAACAAAACAAAACACGATGTTGTTGTTGCTGTGCAAAAGAGTGGTTTTGCTTGGGCTTTGCACCGTGATGACGGCAAGCTAATTTGGTCCACGGAAGCTGGACCAGGAGGCGTTGCAGGAGGTGGAACATGGGGAGCAGCGAGTGACACAAAAAGGGTTTATACTAACATTGGTAATTCTGATCGCAAGAACTTCACCCTCAGACCATCGAAGAAGACTACAAGAAGTGGAGGGTGGGTAGCAATGGAGGCAACGAGTGGGAAGATCTTGTGGTCCACAGAAAACCCTAGTAATGCATCTTCTTTTGGTCCTGTTTCTGTAGCTAATGGCATTGTGTTTGCAGGATCCGTAGATGTCAAAGGACCTATTTATGCAATTAACGCTGAGACAGGTAGTATTGTGTGGTCGTATGAGACAGGATCATCGGTGTACGGTGGCTTGTCTGTCAGTGATGGGTGCATATATGTTGGAAATGGATATAAGATAGGCTTTGGATTGTTTCTTGGAAATTATACTGCTGGAACTTCGCTTTTTGCCTTTTGTGTCTAA 1611 0.4351 MTKFEQITCFIVSMLVICLLTSSLSEASHENTQNWLNHGGDIYNRRYASKEQKISVETVSNLSLKWKFEAGKDITATPAIFDGILYFPSWNGELYAVRTGDGSLVWKQNLQNLTGLSATGFVPGVNWTVSRATPTIADDDVLLVGIYGPALVIAVKRSTGELVWKTRLDSHNTSAITMSGTYYNGAYYVGTSSQEEILTPEECCTFRGSFSKLDVKSGAILWQTFMVPDNHGKKGEYAGAAVWGSSPSIDASRNHIYIATGNLYSAPLEIRQCQEKENNATRPTHPDECVEPENHSDSILALDLDDGKIKWYHQFGGYDVWFLSCSNLSTPNCPPGPNPDADFGEAPIILTIHVNKTKHDVVVAVQKSGFAWALHRDDGKLIWSTEAGPGGVAGGGTWGAASDTKRVYTNIGNSDRKNFTLRPSKKTTRSGGWVAMEATSGKILWSTENPSNASSFGPVSVANGIVFAGSVDVKGPIYAINAETGSIVWSYETGSSVYGGLSVSDGCIYVGNGYKIGFGLFLGNYTAGTSLFAFCV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00844 536 Gene3D - 19 512 - -
Vimu6g00844 536 SMART ire1_9 134 167 IPR018391 -
Vimu6g00844 536 SMART ire1_9 179 225 IPR018391 -
Vimu6g00844 536 SMART ire1_9 247 314 IPR018391 -
Vimu6g00844 536 SMART ire1_9 458 492 IPR018391 -
Vimu6g00844 536 SMART ire1_9 78 109 IPR018391 -
Vimu6g00844 536 Pfam PQQ-like domain 66 311 IPR002372 -
Vimu6g00844 536 Pfam PQQ-like domain 432 510 IPR002372 -
Vimu6g00844 536 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 31 499 IPR011047 -
Vimu6g00844 536 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 9 536 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00844 Vimu-Chr6 9324263 9327480 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00844 - - gmx:100791552 914.835
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00844 6 9324263 9327480 Vimu6g00844 6 9324263 9327480 ECH