Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1000 ATGGAGCTCACTCAGAGTCAGCACAATCACTCTGGAGCTATTGTCATCCTTCTCCTGGTATTTTGTGGATTTACTGTCATGGATATTGTTGATGCAGTTTGGTTCAACCACGGAGGCGACTTGAGTAACAGCAGATCACGCTCCATCGAAGAACCCTTGATCAACCCCCTGCTTATTTCCAAGTTGCGATTGAAATGGAAGTTTTTCACTGGAGATGACACAACAGCAACGCCTGCAGTGGCTCATGGTGTTGTCTACTTTCCTTCATGGAATGGATATTTGTATGCAGTGAATGCATTCAGTGGTGCTCTTGTATGGAGGCAGCATCTAGGGGAGCTCACAGGGCTGAGTCCAGCAGGGGTTGTGGTGAATGTAACTGTGTCAAGAACGACACCTGTAATAGCTGGTCATCTCCTTATCATAGGAATATATGGCCCTGCAGTGGTTGTTGCCATCAATCGGTTTAGCGGGGCACTTGTGTGGTCCACTGTTCTGGATACACGTCCTAGATCTCAAATCACCACGTCTGGAACCCCCTACTTAGAGGGTTTCTATGTAGGTGTATCATCACTTGAGGTAACTCTACCGGCTGAACAGTGTTGCACTTTCCGGGGTAGCATGGCGAAGCTAGACATCCAAACTGGAGCCGTCCTATGGCGAACCTATACAATTCCGGACAACGCTGGCAAACTGGGGGGTTATTCGGGAGCTGCTATATGGGGCAGCAGCCCTGCAATTGACACAAAGAGAAATCTTGTTTACATTGGAACTGGGAACCTGTACAATGCTCCAACTGAGGTGCAACAATGTCAAGCCAATCGGAATAATCAAACAATACCCTCTCAACCCGACCAATGCATCGCTCCAGATGTCCACTTCGACTCCATTCTGGCCTTGGAGTTAGACTCTGGAAAAATCAGATGGTTCCGACAATTCGGAGGCTACGATGTATTTTATTTTGTTTGCCTGGTGCCGAATAACCCAGCTTGTCCGACTGGGCCTAACTTGGATGCGGACTTTGGAGAAGCTCCAATGCTGCTCACCATATTTCCAAATGGCACCAGGCGTGACGTTGTGGTTGCTGTGCAGAAAAGTGGGTTTGCATGGGCCCTAGATCGAGATACGGGTGATATAGTATGGTTCAATCTGGCAGGGCCCGGTGGTCTGGAAGGAGGAGGAGTGTGGGGTGCAGCCACAGACGGGAAAAGGGTGTACACTAACATCGTGAATAACGCGGGAGTGAGGTTCAGGCTGGCACCCTCCAACCAAACCACGACGTTCGGAGCATGGGTAGCATTGGATGCAAATACAGGAGAAATTGTATGGTCAACAGCCAACCCCAGCAATGAAACTGCCCATGGCCCAGTGACGGTGACTAATGGAGTGGTTTTTGCTGGGTCAGTGGCCCCTTCAGGCCCATTCTACGCAATGGACGCAGAAACAGGGACTATTATATGGACATATAACACCAATGCCACCGTGTACGGTGGCGCATCAGTGAGCTACGGTTGTGTTTTCTTGGGCCATGGCTATTCAGTGAGTTTAGCCAGGTTCCACCCGACGTGGACTCGAGGAAATTCTGTCTTCGCATTCTGCACTGTGTGA 1605 0.4972 MELTQSQHNHSGAIVILLLVFCGFTVMDIVDAVWFNHGGDLSNSRSRSIEEPLINPLLISKLRLKWKFFTGDDTTATPAVAHGVVYFPSWNGYLYAVNAFSGALVWRQHLGELTGLSPAGVVVNVTVSRTTPVIAGHLLIIGIYGPAVVVAINRFSGALVWSTVLDTRPRSQITTSGTPYLEGFYVGVSSLEVTLPAEQCCTFRGSMAKLDIQTGAVLWRTYTIPDNAGKLGGYSGAAIWGSSPAIDTKRNLVYIGTGNLYNAPTEVQQCQANRNNQTIPSQPDQCIAPDVHFDSILALELDSGKIRWFRQFGGYDVFYFVCLVPNNPACPTGPNLDADFGEAPMLLTIFPNGTRRDVVVAVQKSGFAWALDRDTGDIVWFNLAGPGGLEGGGVWGAATDGKRVYTNIVNNAGVRFRLAPSNQTTTFGAWVALDANTGEIVWSTANPSNETAHGPVTVTNGVVFAGSVAPSGPFYAMDAETGTIIWTYNTNATVYGGASVSYGCVFLGHGYSVSLARFHPTWTRGNSVFAFCTV* 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1000 534 Gene3D - 27 511 - -
Vvi1g1000 534 SMART ire1_9 244 311 IPR018391 -
Vvi1g1000 534 SMART ire1_9 132 164 IPR018391 -
Vvi1g1000 534 SMART ire1_9 397 445 IPR018391 -
Vvi1g1000 534 SMART ire1_9 78 109 IPR018391 -
Vvi1g1000 534 SMART ire1_9 455 489 IPR018391 -
Vvi1g1000 534 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 32 497 IPR011047 -
Vvi1g1000 534 PANTHER QUINOPROTEIN ALCOHOL DEHYDROGENASE (CYTOCHROME C) 32 533 - -
Vvi1g1000 534 Pfam PQQ-like domain 75 308 IPR002372 -
Vvi1g1000 534 Pfam PQQ-like domain 370 493 IPR002372 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1000 Vvi-Chr1 11205576 11207549 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1000 - - vvi:104879807 1092.41