Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01251 ATGGCTCTTTCCTCCAAACATCCTCGCCTGTTCAACCAAATTAGGACTTTTGTGAATGTGAAGGTCAAATGGGTCCGAGACCCATATCTTGATACTGCAGTCCTGAAAGAGAAAGATCTCAAACAGACAATTTCCCTCAAGAACCAAATCATTTCATCTCCTTCGGAATCCGTTTCCATGTATACTGCTTCTCAACTAAAAGCTTCCCTCAACCTTCCCACTACAACTACCAAATTCATTGACAAATATCGTTGTGTTTTCACACAATTCCAACCTGGTCCTGGTCTTCCTCCAGTTGTCAAGCTCACACCTCAAGCCTTTTCCCTCCACAAAGAAGAAATGGCTGTTCATAACTCTCCCACTAATCGTGAAGAAACTGTTCACAGGCTTGCAAGGCTTCTGATGCTTGCTGGCATGGAAAAATTGCCTCTTTATGTAATTGAGAAGCTAAAATGGGATATGGGACTACCTCATGATTATGTGACGACCCTTTTGTCTGATTACCCTGATTACTTTGATGTTTGTGTTGTGGAAGATCCATCATCTGGAAAAGAATTGCTTGCTTTAGAGCTTGTTTCATGGAGAAAAGAGCTTTCTGTGTCTGAGTTACAAAAGAGTGCAATGAGCTTGGGCTATGTTGGAGATAAAAGAAGGCACGGTATTACATTTCCCATATTTTTGCCAAAAGGTTTTGATTTAGAGAAGAGGGTGAAGGCTTGGGTTGAGAACTGGCAAAAATTGCCTTATGTTTCTCCATATGAAGATGCTTTTCATCTTGACTCAAATAGTGACCAAGCAGAGAAGTGGACAGTGGCAATTTTGCATGAGTTGCTTTCTCTTCTTGTGTCAAAGAAGACTGAGAGAGAGAATTTGCTTTGTTTTGGAGAATGTTTAGGGTTGGCCTTGAGATTCAAGAAGGCTTTGGTTCATCATCCTGACAATTACAGCAGGGTCAGCAGACATCTGCCATTCCTAGATGAGCTCAAGTGTATGGGATATTTTCCATCTCCAGTCAATTCATCACAGCTTTGGTTGGATGCTGAGTTGGAGTTCCTCTGTTTTTGGCAGCGTCTCCATCCCTTGCTTGGCAAGATTGCTCCCCCTCCTGCCTATGTTATTGACATATTAGTTATGATTCCGATTGATGATGGCATGAAAATAGTCAGTGGATGGCATCGTTTGGTTTTTTGTCTTCCTTTGATTTTCCTCCTTACTCATCTGTTTTCCGTCATGGAGTTGCACAAAAACCCAAAAATGGAGGAACCCCACAAGCAACTAAACAAGAAATTCGATCATCTAGTTATTGGTCCTGCTGCTGGACAAGGCTTGTCAAATCGTTTGCAATGCCAAGGGGCAAAAGCTCTCAATAGGACCCATTATTCTAGCAGCAGATCAGCTGTAGATGGAAGTATCACATTTGTCACTGTCTTTACCATTTATAATTCTTCTCTCAGTGATGTAGACGATAAATCATCAAACACAGTTGTTGGCAATGCTTCATACAATAAGTTTGGCAGGTCCATGGCTTTGTTGAATGTTTTTATTAACTTCATTCAGGTCAGAATGCCCCAGAGCAAAGTAATTATTCTCACAGATCCCGTGTCTGACCTCTCAGTGCCACGGAATAGGGTCTCTCTATATCCTATACAAGGTGAATATTCACGAGACAAGTTGATGCTCCAAAGGATCAGGTCTTACATTACCTTTCTAGAAACAAGGCTTCAGAAACTTACTCAGAATCCGAGGAATATCACTCATTACATCTTCACTGATTCTGATATAGCAGTGGTTGATGATTTAGGGCATATTTTTCATGACAATCCTAATTTTCATCTGGCTCTGACTTTTAGGAACAATAAGGCTCAACCTTTGAATTCAGGATTCATTGCAGTAAGGGGTACCCCAGAAGCAATTTTAAGGGCAAAGCTTTTCCTACAAGAGGTCTTGAAAGTTTATAGCACAAAATATAGAAATGCTTCCCGCATGCTGGGTGATCAGTTAGCTCTTGCTTGGGTTGTGAAGTCAAAACCTCATTTTGACGCCAGCAGGTATGCCAAAGCACTTGCTTTCTCTGAGGATATTGGTGGCACTTCAGTGTTGTTCTTACCTTGTTCTCTGTACAATTGGACTCCGCCTGAGGGTGCTGGTCAATTTCACGGCATGCCATTGGATGTTAAGGTTGTTCATTTTAAAGGATCAAGAAAACGCTTAATGCTCGAATCTTGGAATTTTTATTCCTCTTCTCTTGATATTTCAGACATGTTATGTCTCATTTTGGGAAGTGGAAGAACCAAATACGATTTTTGA 2307 0.4109 MALSSKHPRLFNQIRTFVNVKVKWVRDPYLDTAVLKEKDLKQTISLKNQIISSPSESVSMYTASQLKASLNLPTTTTKFIDKYRCVFTQFQPGPGLPPVVKLTPQAFSLHKEEMAVHNSPTNREETVHRLARLLMLAGMEKLPLYVIEKLKWDMGLPHDYVTTLLSDYPDYFDVCVVEDPSSGKELLALELVSWRKELSVSELQKSAMSLGYVGDKRRHGITFPIFLPKGFDLEKRVKAWVENWQKLPYVSPYEDAFHLDSNSDQAEKWTVAILHELLSLLVSKKTERENLLCFGECLGLALRFKKALVHHPDNYSRVSRHLPFLDELKCMGYFPSPVNSSQLWLDAELEFLCFWQRLHPLLGKIAPPPAYVIDILVMIPIDDGMKIVSGWHRLVFCLPLIFLLTHLFSVMELHKNPKMEEPHKQLNKKFDHLVIGPAAGQGLSNRLQCQGAKALNRTHYSSSRSAVDGSITFVTVFTIYNSSLSDVDDKSSNTVVGNASYNKFGRSMALLNVFINFIQVRMPQSKVIILTDPVSDLSVPRNRVSLYPIQGEYSRDKLMLQRIRSYITFLETRLQKLTQNPRNITHYIFTDSDIAVVDDLGHIFHDNPNFHLALTFRNNKAQPLNSGFIAVRGTPEAILRAKLFLQEVLKVYSTKYRNASRMLGDQLALAWVVKSKPHFDASRYAKALAFSEDIGGTSVLFLPCSLYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFYSSSLDISDMLCLILGSGRTKYDF 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01251 768 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 510 750 IPR029044 -
Cca04g01251 768 PANTHER POLYPHOSPHATIDYLINOSITOL PHOSPHATASE 385 768 - -
Cca04g01251 768 Pfam Plant organelle RNA recognition domain 25 313 IPR021099 GO:0003723
Cca04g01251 768 Coils Coil 560 580 - -
Cca04g01251 768 SUPERFAMILY Nucleotide-diphospho-sugar transferases 510 736 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01251 Cca-Chr4 15185460 15192246 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01251 - - gmx:100785469 699.893