Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g3080 ATGGATTCATCTTCATCTTTACACATTGCAATGTTTCCATGGTTTGCTATGGGGCATCTAACCCCATATCTCCACCTCTCCAACAAATTAGCCAAAAGAGGACACAAAATCTCCTTCTTCATTCCCAGAAGAACACAAGCCAAGTTAGAGCAATTCAACCTTTACCCACACCTCATCACCTTTCACCCCATTAATGTTCCTCATGTTGGTGGCCTTCCCCATGGTGCTGAAACCACTTCAGATGTCTCTTTCTCTTTAGGTCCACTCATCATGACAGCCATGGATCGTACTGAAAAGGACATCGAGCTTCTCCTAACTGAGCTAAAGCCACAAATTGTTTTCTTTGATTTCACCTATTGGCTACCAAACTTGACTCGCCGATTGGGGATCAAATCTTTCCAATACTGGATCATTAGCCCCGCAACAATATCATACACTACATCCCCAGCAAGGATGAGACAAAGGGGTAGCATAACTGAAGTTGATCTCATGCAACCCCCACCTGGGTACCCTGCTTCATCCATCAAGCTTCATGCTCATGAGGCTAAGTTCCTAGCTTCGAAAAGGAACTGGGAGTTTGGAAGTGGTGTTCTTTTCTATGACCGTCTGTATAATGGTTTAAGCCTCTCAGATGCAATAGGATTCAAGGGTTGCAGAGAAATTGAGGGTCCTTATGCAGACTACCTTGGAGAGCAATTTGGGAAGCCTGTTATGCTTTCAGGACCTGTTATACCTGAACCACCCAACACTGTTTTGGAAGAAAATTGGGCTGAATGGCTTGGAGGATTCAAACATGGTTCAGTAATTTATTGTGCACTTGGAAGTGAGTGGGTGTTACCTGTAGATCAATTCCAAGAATTGTTGTTGGGTCTCGAGCTAACAGATCTGCCATTTTTGGCTGTTCTCAAACCTCCTGTTGGGTGTGAAACAGTTGAAATTGCTCTGCCTGAAGGTTTTGAAGAAAGAGTTCAAGGGAGAGGGATTGTCCAAAGTGGATGGATACAGCAGCAGCTGATTTTGCAACACCCATCTGTTGGTTGCTTTCTGACACATTGTGGAGCTGGTTCATTGACAGAAGCACTGATCAATAAGTGTCAGATAGTGTTGTTGCCACATCTAGATAGTGACCACATTGTTAATGCAAGGATGATGGGTAGAAACTTGAAGGTTGGGGTTGAAGTGGTGAAGGGCGAAGAAGATGGGTTGTTCACAAAGGAAAGTGTTTGCAAAGCTGTGAAAATTGTGATGGATGATGAGAATGAGGTTGGAAATGAAGTGAGGGAAAATCATACCAAATTGAGAAGCCAATTGCTTAGCCATGATTTGGAGTCAGCTTGTCTTGATAATTTCTGTCAGAAGCTTCAAGATTTAGTCAGGTGA 1380 0.4341 MDSSSSLHIAMFPWFAMGHLTPYLHLSNKLAKRGHKISFFIPRRTQAKLEQFNLYPHLITFHPINVPHVGGLPHGAETTSDVSFSLGPLIMTAMDRTEKDIELLLTELKPQIVFFDFTYWLPNLTRRLGIKSFQYWIISPATISYTTSPARMRQRGSITEVDLMQPPPGYPASSIKLHAHEAKFLASKRNWEFGSGVLFYDRLYNGLSLSDAIGFKGCREIEGPYADYLGEQFGKPVMLSGPVIPEPPNTVLEENWAEWLGGFKHGSVIYCALGSEWVLPVDQFQELLLGLELTDLPFLAVLKPPVGCETVEIALPEGFEERVQGRGIVQSGWIQQQLILQHPSVGCFLTHCGAGSLTEALINKCQIVLLPHLDSDHIVNARMMGRNLKVGVEVVKGEEDGLFTKESVCKAVKIVMDDENEVGNEVRENHTKLRSQLLSHDLESACLDNFCQKLQDLVR* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g3080 459 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 332 420 IPR002213 GO:0008194
Lja3g3080 459 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 2 439 - -
Lja3g3080 459 PANTHER GLYCOSYLTRANSFERASE 4 456 - -
Lja3g3080 459 CDD GT1_Gtf-like 7 441 IPR002213 GO:0008194
Lja3g3080 459 Gene3D Glycogen Phosphorylase B; 2 254 - -
Lja3g3080 459 PANTHER ANTHOCYANIDIN 3-O-GLUCOSIDE 2''-O-GLUCOSYLTRANSFERASE-RELATED 4 456 - -
Lja3g3080 459 Gene3D Glycogen Phosphorylase B; 255 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g3080 Lja-Chr3 58359239 58361017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g3080 5 459 Glycosyltransferase AT5G54010 48.684 8.37e-161 460
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g3080 K22794 - gmx:100808470 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3082 3 58372949 58374635 Lja3g3080 3 58359239 58361017 PCT
Lja3g3080 3 58359239 58361017 Lja3g3032 3 56619103 56620476 PCT
Lja3g3033 3 56643183 56644568 Lja3g3080 3 58359239 58361017 PCT