Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian5g00623 ATGGCTCTTTCCTCCAGACATCCACATCTGTTCAACCATATCAGGACTTTTGTAAATGCAAGGGTCAAATGGGTTCGAGACCCATATCTTGATAATGCAGTCCTGAAAGGGAAAGATCTCAAGCAAATAATTTCTCTCAAGAACCAAATTATTTCATCTCCTTCCAAATCCCTCTCTATGTATACTGCTTCTCAATTGAAAGCTTCCCTCAACCTTCCCACTACGACTTCCAAATTCATTGACAAATACCATTCTGTCTTTACCCAATTTCAACCTGGTCCTGGTCTTCCTCCAGTTGTCAAACTCACACCTCAAGCCTTTTCCATCCATATAGAAGAAATGGCTGTTCATAACTCTCCTACTAATCGTCAAGACACTGTTCAGAGGCTCTCAAGGCTTTTAATGCTTGCTGGCATGACAAAATTGCCTCTCTATGTAATTGAGAAGCTAAAGTGGGATATGGGTCTTCCTCATGATTATGTGACAACCCTTTTGGCTGACTACCCTGATTATTTTAATGTTTGCGTTGTGGAAGATCCGTCATCTGGAAAAGAGGTGCTTGCTTTAGAGCTTGTTTCATGGAGAAAAGAGCTTTCTGTGTCTGAGTTAGAAATGAGGGCAAGGAGCTTGGGCATTAGTGGAGATAAAAGAAGGCATGATATTGCATTTCCCTTAATTTTTCCGAAAGGTTTTGATTTAGTAAAGAGGGTGAAGACTTGGGTTGAGAATTGGCAAAAGTTGCCTTACGTTTCTCCATATGAAGATGCTTTTCATCTCGACTCAAATAGTGACCAAGCGGAGAAATGGACTGTCGCAATATTGCATGAGTTGCTTTCTCTTCTAGTGTCAAAGAAGACAGAAAGAGAAAATTTGCTTTGTTTTGGGGAGTGTTTGGGGTTGGCCTTAAGATTTAAAAAGGCTTTGGTTCATCATCCTGGTATATTTTACATTTCCAATAAGATTACGACTCAGACTGTTGTACTTAGAGAGGCTTATAGTAAGGATTTTTTGGTTAAGAAACATCCATTAGTGGGTATGAGATATTGGTACATTAATCTTATGGGCAAAACATAG 1074 0.3957 MALSSRHPHLFNHIRTFVNARVKWVRDPYLDNAVLKGKDLKQIISLKNQIISSPSKSLSMYTASQLKASLNLPTTTSKFIDKYHSVFTQFQPGPGLPPVVKLTPQAFSIHIEEMAVHNSPTNRQDTVQRLSRLLMLAGMTKLPLYVIEKLKWDMGLPHDYVTTLLADYPDYFNVCVVEDPSSGKEVLALELVSWRKELSVSELEMRARSLGISGDKRRHDIAFPLIFPKGFDLVKRVKTWVENWQKLPYVSPYEDAFHLDSNSDQAEKWTVAILHELLSLLVSKKTERENLLCFGECLGLALRFKKALVHHPGIFYISNKITTQTVVLREAYSKDFLVKKHPLVGMRYWYINLMGKT 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian5g00623 357 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 16 355 IPR045040 GO:0003723
Vian5g00623 357 Pfam Plant organelle RNA recognition domain 25 356 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian5g00623 Vian-Chr5 22325428 22326501 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian5g00623 - - gmx:112997648 629.017