Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2001 ATGGCAGATAATGTTGTTGCCTTTCTGCTACAAAACTTGTCACAGCTTCTTGAGGATGAATTAAAATTGCTTTTTGGCATCGAGGACAAAATCAACTCACCATGCAATGAGCTCAAGTTTATAGCTATCTTCTTCAAGAGCTTTGAGGGGAAGATGTGGCCCACGAAGTTGAGGATGTGGTTGACACCTACATTGCCAATGTCACCAACCACAAAACCAGAAACTCACCAAGCAAATTATTCCACTTCAAAGAACGATTCATGGTGCTTCACAAAAACAAGGAGAAATATGGCATCGGAGAAGGAAGATATTGATTTCAGTGAGGAGCTTATGGTAGTGAGCTGGTTGTTCATGGCTCTTTCCTCCAAACATCCACACCTGTTCAACCATATTAGGACTTTTGTGAATGCGAAGGTCAAATGGGTCCGAGACCCATATCTTGATACTGCAGTCCTGAAAGAGAAAGATCTCAAACAGACAATTTCCCTCAAGAACCAAATCATTTCATCTCCTTCCAAATCTCTCCCCATCTATACTGCTTCTCAACTAAAAGCTTCCCTCAACCTTCCCACTACAACTACCAAATTCATTGACAAATATCATTGTGTTTTCACACAATTCCAACCTGGTCCTGGTCTTCCTCCAGTTGTCAAGCTCACTCCTCAAGCCTTTTCCCTCCACAATGAAGAAATGGCTGTTCATGACTCTCCCACTAATCGTGAAGACACTGTTCAGAGGCTTGCAAGGCTTCTAATGCTTGCTGGCATGACAAAATTGCCTCTTTATGTAATTGAGAAACTAAAATGGGATCTGGGACTTCCTCATGATTATGTGATGACCCTTTTGGCTGATTACCCTGATTACTTTAATGTTTGTGTTGTGGAAGATCCATCATCTGGAAAAGAATTGCTTGCTTTAGAGGTTGTTTCATGGAGAAAAGGGCTTTCTGTGTCTGAGTTAGAAAAGAGGGCAATGAGCTTGGGCTATAGTGGAGATAAAAGAAGGCATGATATTGCATTTCCCATATTTTTGCCAAAAGGTTTTGATTTAGAGAAGAGGGTGAAGACTTGGGTTGAGAATTGGCAAAAGTTGCCTTATGTTTCTCCATATGAAGATGCTTTTCATCTTGACTCAAATAGTGACCAAGCAGAGAAGTGGACAGTGGCAATTTTGCACGAGTTGCTTTCTCTTCTTGTGTCAAAgaagacagagagagagaatttgcTTTGTTTTGGAGATTGTTTAGGGTTGGCCTTGAGATTTAAGAAGGCTTTGGTTCATCATCCTGGTATATTTTACATTTCCAATAAGATTAGGACTCAGACTGTTGTACTTAGAGAGGCTTATAGAAAAGATTTTTTGGTTAAGAAACATCCATTGGTGGGTATCAGATATTGGTACATTAATCTTATGAGCAAAACATAG 1425 0.3951 MADNVVAFLLQNLSQLLEDELKLLFGIEDKINSPCNELKFIAIFFKSFEGKMWPTKLRMWLTPTLPMSPTTKPETHQANYSTSKNDSWCFTKTRRNMASEKEDIDFSEELMVVSWLFMALSSKHPHLFNHIRTFVNAKVKWVRDPYLDTAVLKEKDLKQTISLKNQIISSPSKSLPIYTASQLKASLNLPTTTTKFIDKYHCVFTQFQPGPGLPPVVKLTPQAFSLHNEEMAVHDSPTNREDTVQRLARLLMLAGMTKLPLYVIEKLKWDLGLPHDYVMTLLADYPDYFNVCVVEDPSSGKELLALEVVSWRKGLSVSELEKRAMSLGYSGDKRRHDIAFPIFLPKGFDLEKRVKTWVENWQKLPYVSPYEDAFHLDSNSDQAEKWTVAILHELLSLLVSKKTERENLLCFGDCLGLALRFKKALVHHPGIFYISNKIRTQTVVLREAYRKDFLVKKHPLVGIRYWYINLMSKT 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2001 474 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE FAMILY PROTEIN 119 473 - -
Ssu3g2001 474 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 119 473 IPR045040 GO:0003723
Ssu3g2001 474 Pfam Plant organelle RNA recognition domain 142 473 IPR021099 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2001 Ssu-Chr3 65360635 65369402 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2001 - - gmx:112997648 652.514