Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1418 . . . Aed5g0993 . . . . . . . Apr3g0945 . . . Bva07g01889 . Cca04g01243 . . . . Gma12g01201 Gma06g02504 Gso12g1109 Gso6g2254 . . . . Lan8g1444 . . . . . . . . . . . . . . Phco9g01567 . . Pste1g03695 . . . Spst11g00808 Ssu3g2011 . . . . Vian5g00629 . . Viun11g01116 . Vra2g1098
Pvu11g1419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1420 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1421 . . . Aed5g0998 . . . . . . . . . . . . . Cca04g01246 . . . . . . . Gso6g2251 . . . . . . . . . . . . Lja3g2425 . . . . . . Phco9g01569 . . Pste1g03699 Pumo11g00920 . . Spst11g00806 Ssu3g2006 . . . . Vian5g00627 . . Viun11g01112 . Vra2g1104
Pvu11g1422 . . . Aed5g1000 . . . . . . . . . . . . . Cca04g01247 . . . . Gma12g01207 Gma06g02499 Gso12g1113 Gso6g2250 . . . . . . . . . . . . Lja3g2424 . . . . . . Phco9g01571 . . Pste1g03703 Pumo11g00919 . . Spst11g00805 Ssu3g2005 . . . . Vian5g00626 . . . . Vra2g1105
Pvu11g1423 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1425 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1426 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1427 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01575 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1418 Chr11 31891719 31893267 +
Aed Aed5g0993 Chr5 7835705 7836298 +
Apr Apr3g0945 Chr3 24364126 24365394 -
Bva Bva07g01889 Chr07 16937784 16939086 -
Cca Cca04g01243 Chr04 14974534 14976404 +
Gma Gma12g01201 Chr12 15394896 15395417 +
Gma Gma06g02504 Chr06 47633384 47634699 -
Gso Gso12g1109 Chr12 15239203 15240588 +
Gso Gso6g2254 Chr6 43581603 43582946 -
Lan Lan8g1444 Chr8 21557197 21559788 -
Phco Phco9g01567 Chr9 36657921 36659345 +
Pste Pste1g03695 Chr1 17932058 17933180 +
Spst Spst11g00808 Chr11 32101220 32101720 -
Ssu Ssu3g2011 Chr3 65694652 65695168 -
Vian Vian5g00629 Chr5 22790338 22790861 -
Viun Viun11g01116 Chr11 24221122 24222345 -
Vra Vra2g1098 Chr2 13313682 13315066 +
Pvu Pvu11g1419 Chr11 31934459 31934757 -
Pvu Pvu11g1420 Chr11 31935714 31935723 -
Pvu Pvu11g1421 Chr11 31953122 31961073 +
Aed Aed5g0998 Chr5 7856464 7859540 +
Cca Cca04g01246 Chr04 15046810 15050000 +
Gso Gso6g2251 Chr6 43537606 43541231 -
Lja Lja3g2425 Chr3 29758401 29763377 -
Phco Phco9g01569 Chr9 36724714 36727492 +
Pste Pste1g03699 Chr1 17959578 17962878 +
Pumo Pumo11g00920 Chr11 33369030 33372669 -
Spst Spst11g00806 Chr11 32085141 32087948 -
Ssu Ssu3g2006 Chr3 65608710 65611719 -
Vian Vian5g00627 Chr5 22725844 22727538 -
Viun Viun11g01112 Chr11 24173190 24176418 -
Vra Vra2g1104 Chr2 13469242 13472486 +
Pvu Pvu11g1422 Chr11 32073084 32082051 +
Aed Aed5g1000 Chr5 7881133 7891123 +
Cca Cca04g01247 Chr04 15116035 15127179 +
Gma Gma12g01207 Chr12 15617604 15630949 +
Gma Gma06g02499 Chr06 47554915 47566505 -
Gso Gso12g1113 Chr12 15459082 15472863 +
Gso Gso6g2250 Chr6 43504033 43515074 -
Lja Lja3g2424 Chr3 29727066 29738078 -
Phco Phco9g01571 Chr9 36840700 36855063 +
Pste Pste1g03703 Chr1 17992852 18004182 +
Pumo Pumo11g00919 Chr11 33331796 33343241 -
Spst Spst11g00805 Chr11 32062823 32069090 -
Ssu Ssu3g2005 Chr3 65544994 65556046 -
Vian Vian5g00626 Chr5 22606321 22615973 -
Vra Vra2g1105 Chr2 13511201 13522404 +
Pvu Pvu11g1423 Chr11 32127796 32127969 +
Pvu Pvu11g1424 Chr11 32199327 32199736 -
Pvu Pvu11g1425 Chr11 32294390 32295876 -
Pvu Pvu11g1426 Chr11 32399582 32400007 +
Pvu Pvu11g1427 Chr11 32475537 32475912 +
Phco Phco9g01575 Chr9 36886968 36887290 +