Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa2g05113 ATGCTTGTGTGTGCTAATTCTTCATCATACCAACCATGGTCTTCCACAATCCCCACATTGATTTTGCTCCCAAAATTCACAACCAAAGAACACATGAATCAACTCCACGCACGTTTAATAACAACAGGATTCATCAAAAACACGTTCCTCACTACCAAACTTATCCTCACTTTCGTTTCCTCACCCCATAAGCCTCTCACTGAGTTTGCTCGTTACATCTTCTTCAAGAACCATGCTTTACGTGTTGAAAGGGATAGAAATGACGACCCTTTTCTCTGGAATGCTGTTATCAGGTCTTATTCTCACGGTAGTGATCCAAAAGGAGCTCTTTTTTTGCTGTGTTTGATGATTGAAAATGGGGTTTGTTTGGATAAGTATAGTTTTTCACTGGTTTTGAAGGCTTGTTTGAATATGGGTTTGATGAAAGAAGGAATGCAGGTTTATGGGTTGTTGTGTAAGACGGATATTGGGTGTGGTTTGTTTTTGCAGAATTGTTTGATTGGGTTGTTTATGAGATGTGGGTGTGTTGATTTTGCGGAGCAAATGTTTGATAGAATGGCTGAGAGGGATTCTGTTTCTTATAATTCAATGATTGATGGGTACGTGAAATGTGGGTTGATTGGAAGAGCGTGTGAGTTGTTTAATGGTATGGCAATGGAAGAGAAGAATTTGATTACATGGAATTCAATGATCAGAGGCTATGTGAGATGTGCTGAGGAGGATGATGGGTTGAGGTTTGGTTGGAGTTTGTTTGTTAAAATGCCTGAGAGGGACTTGGTTTCTTGGAACACAATGATTGATGGTTGTGTGAAGCGGGGAAACATGGACGTTGCTCGGGTATTTTTTGATGGGATGGTGGAAAGAGATATGGTCAGTTGGGTTACGATGATTGATGGTTACGCTAAATCGGGTGATGTACTTGCTGCGAGGAGTTTGTTTGATGAAATGCCAAGGCGAAACGTCATTTGTTGTAATTCAATGATGGCTGGCTATGTTCAGAACGGTTATTGCGTTGAGGCATTGAAGCTGTTTCATGATATTAGAAGGGCGACAGATATGTTACCGGATAATACGATGCTGTTGATGGTTCTTACAGCAGTCGCACAATTAGGTTGCGTGGAGGATGGAGTTGCGATACATCGTTATTTAATGGACAATGGTTACTCTCTGAGTGATAATCTCGGCGTTGCTCTAATTGACATGTACTCAAAGTGTGGTAGCATCGAGAATGCTATATCAGTTTTCAAGGATATTGATAAAAAATGTGTTGATCATTGGAATGCTATGATTGGTGGCTTAGCGACTCATGGAATGAGTGAAATGGCTTTTGATTTTCTAATGGAGATGGAAAGGCTTTGTATTACACCTGACGATATCACGTTCATCGGAGTATTGAGTGCTTGTAGGCATGCTGGAATGTTGAAAGAAGGACTGATATGTTTTGAGCTTATGCAAAAAGTATACAAGCTGCAACCCAAAGTGCAACATTATGGATGCATGGTGGATATGCTTAGCCGAGCTGGACTTGTCGAAGAAGCAACAAAACTCATTCAAAAAATGCCTATTGAACCAAATGATGTGATTTGGAAGACCTTGCTTAGTGCTTGTCAAATTCATGAAAACTTCTCTATAGGAAAGCCTATAGCTCAGCAATTGATTCAACTAAAGTCATGCAGTGCAAGTTCTTATGTGCTCTTGTCGAATGTCTATGCTTGTTTGGGTTTGTGGGATAATGTTAGAAGGGTTAGGACAGAAATGAAAGAGAGACATTTAGGGAAAATTCCAGGTTGTAGTTGGATTGAATTGGAGGGAATTGTTCATAACTTTTCTGTACAAGATAGAACACATCCTCAGGTTACTGAGATTTATTCTATGTTAGATAGTTTGTAA 1890 0.3984 MLVCANSSSYQPWSSTIPTLILLPKFTTKEHMNQLHARLITTGFIKNTFLTTKLILTFVSSPHKPLTEFARYIFFKNHALRVERDRNDDPFLWNAVIRSYSHGSDPKGALFLLCLMIENGVCLDKYSFSLVLKACLNMGLMKEGMQVYGLLCKTDIGCGLFLQNCLIGLFMRCGCVDFAEQMFDRMAERDSVSYNSMIDGYVKCGLIGRACELFNGMAMEEKNLITWNSMIRGYVRCAEEDDGLRFGWSLFVKMPERDLVSWNTMIDGCVKRGNMDVARVFFDGMVERDMVSWVTMIDGYAKSGDVLAARSLFDEMPRRNVICCNSMMAGYVQNGYCVEALKLFHDIRRATDMLPDNTMLLMVLTAVAQLGCVEDGVAIHRYLMDNGYSLSDNLGVALIDMYSKCGSIENAISVFKDIDKKCVDHWNAMIGGLATHGMSEMAFDFLMEMERLCITPDDITFIGVLSACRHAGMLKEGLICFELMQKVYKLQPKVQHYGCMVDMLSRAGLVEEATKLIQKMPIEPNDVIWKTLLSACQIHENFSIGKPIAQQLIQLKSCSASSYVLLSNVYACLGLWDNVRRVRTEMKERHLGKIPGCSWIELEGIVHNFSVQDRTHPQVTEIYSMLDSL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa2g05113 629 Gene3D Tetratricopeptide repeat domain 68 156 IPR011990 GO:0005515
Vifa2g05113 629 Gene3D Tetratricopeptide repeat domain 157 235 IPR011990 GO:0005515
Vifa2g05113 629 Gene3D Tetratricopeptide repeat domain 354 474 IPR011990 GO:0005515
Vifa2g05113 629 FunFam Pentatricopeptide repeat-containing protein 396 629 - -
Vifa2g05113 629 Pfam E motif 539 601 IPR046848 -
Vifa2g05113 629 Gene3D Tetratricopeptide repeat domain 475 598 IPR011990 GO:0005515
Vifa2g05113 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 422 456 IPR002885 -
Vifa2g05113 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 288 IPR002885 -
Vifa2g05113 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 289 323 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 322 356 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 192 220 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 291 321 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 260 291 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 426 457 IPR002885 -
Vifa2g05113 629 NCBIfam pentatricopeptide repeat 92 124 IPR002885 -
Vifa2g05113 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 226 IPR002885 -
Vifa2g05113 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 89 123 IPR002885 -
Vifa2g05113 629 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 250 629 IPR046960 GO:0003723|GO:0009451
Vifa2g05113 629 Pfam PPR repeat family 422 468 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 497 520 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 92 121 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 397 421 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 164 189 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 260 289 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 192 217 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 291 321 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 225 237 IPR002885 -
Vifa2g05113 629 Pfam PPR repeat 323 349 IPR002885 -
Vifa2g05113 629 Gene3D Tetratricopeptide repeat domain 280 348 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa2g05113 Vifa-Chr2 1527393116 1527395005 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa2g05113 106 629 Glycoside Hydrolase AT3G49170 31.215 9.00e-84 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa2g05113 - - gmx:100788616 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa2g05113 2 1527393116 1527395005 Vifa2g05113 2 1527393116 1527395005 ECH