Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1408 ATGCTTGTTTGTGCAAATTCTTCACACCAGCCATGGGCATCAACCATTCCCACACTCATCATGCTCCCAAAATGCACAACCATAGACCACGTGAATCAAATCCATGCACGCATGATAACAACCGGGTTCATAAAAAACACCACACTCACCACAAAACTTGTCCTCACTTTCATTTCTTCACCCCATGAGCCTCTTGTTGAGTTTGCTCGCTGCATCTTCTTCAAGCACCATGCTGTTCGCGCTCCCAGTGAGCAAGATGATGACCCTTTTCTTTGGAATGCGGTGATCAGGTCTTATTCTCATGGCCGTGACCCAAAAGGGGCAATGGTTTTGCTCTCTTTGATGCTTGAAAATGGGGTTTGTTTGGATAAGTACTCATTTTCGCTGGTTTTGAAGGCGTGTTCTCAGGTGGGTTTGATGAAGGAGGGAATGCAGGTTCATGGGTTGTTGTGTAAGACAGATATTGTGTCTGATGTGTTTTTGCAGAATTGCTTGGTGAGTTTGTTTGTGAGGTGTGGGTGTGTTGAGTTTGCGCGGCAAGTGTTTGACAGAATGCCTGAGAGGGATTCTGTTTCTTATAACTCGATGATTGATGGGTATGTGAAATGTGGGGCGGTTGGAAAAGCGCGTGAGTTGTTTGATGGTATGTTGGTTGAGGAGAAGAATTTGATTACTTGGAATTCAATGATTGGAGGGTGTGTGAGATGTGAAGATGGGCTGAAGTTTGCTTGGAGTTTGTTTCTTAAAATGCCTGAGAGGGACTTGGTTTCTTGGAACACGATGATTGATGGCTGTGTGAAGCATGGGAAGATGGAGGATGCTCAAGCATTATTTGATAAGATGCCGGAAAGGGATCTGGTCAGTTGGGCTACTATGATAGCCGGTTACGCGAAATCGGGTGATGTTCTTGCTGCGAGGAGTTTGTTTGATGAAATGCCCAGGAGAGACACCATTTCTTGTAACACAATGATGGCTGGATATGTTCAGAATGGGTACTGCGTCGAGGCTTTGAAACTATTTCATGATATGAGAAGTGCGACAAATATGTTACCTGATGATACAACGTTGTTGATTGTTCTTACAGCAATTGCTCAGTTAGGACATGTTGAGGATGGAGTTGTGATACATCGATATTTGATGGACAATGGTTATTCTCTGAGTGGTAATCTTGGCGTTGCTCTGATTGACATGTATTCCAAGTGTGGTAGCATTGATAGTGCCATCTCAGTGTTTGAGAATATTGAACAAAAATGCATTGATCATTGGAATGCTGTGATTGGTGGCTTAGCTGTTCATGGAATGGGTGTAATGGCTTTTGATTTTCTCATGGAAATGGAAAGGCTTTCTATTATACCTGATGATATCACATTCATTGGACTGTTGAGTGCTTGTAGGCATGCTGGGATGTTGAAGGAGGGATTGATATGTTTTGAGCTCATGAAAAAAGTGTACAAACTGGAACCTAAAGTGCAGCACTATGGTTGCATGGTGGATATGCTTAGCCGAGCAGGACACGTTGAAGAAGCCATGAAACTCATTGAGAAGATGCCTATTGAACCCAATGATGTCATTTGGAAGACTTTGCTTAGTGCTTGCCAAAGCTATGAAATCTTCTCGATAGGAGAGCCTATAGCTCAACAATTGATTCAGCTTAATTCAAGCAGTCCAAGTTCCTATGTGCTCCTGTCTAATATTTATGCCAGTTTGGGCATGTGGGACGAAGTTAAAAGAGTTAGAACAAAAATGGAAGAAAAAAATTTGAAGAAAATTCCAGGTTGTAGTTGGATTGAACTGGGGGGAATTGTTCACCAGTTCTCTGTACAAGATAGGACACACCCTCAGCAAGCGGAGTACGGTGTCCTTCTCAACCACTCACCATCATGGGGCGTATGCACAGTGGCGGCTCTTCCATACAAGCGTTCCCCACCCAGCTGGCTCAAGATCGCTTCTCAAGATGTTGAGGAGAACATCTGCAAGTTTGCCAAGAAGGGTTTGACCCCATCTCAGATTGGTGTTATTCTTCGTGACTCTCATGGAATCGCTCAGGTGAAGAGTGTCACTGGAAGCAAGATTCTGCGTATATTGAAGGCTCATGGACTTGCTCCTGAAATTCCTGAAGATCTGTATCACCTGATCAAGAAGGCAGTCTCAATCAGGAAGCACTTGGAGAGGAATAGAAAGGACAAGGATTCTAAATTCAGATTAATTTTGGTTGAGAGCAGGATCCACCGCCTTGCTCGTTACTATAAGAAGACAAAGAAACTCCCACCTGTCTGGAAGTATGAATCAACTACTGCCAGCACACTTGTGGCTTAG 2316 0.437 MLVCANSSHQPWASTIPTLIMLPKCTTIDHVNQIHARMITTGFIKNTTLTTKLVLTFISSPHEPLVEFARCIFFKHHAVRAPSEQDDDPFLWNAVIRSYSHGRDPKGAMVLLSLMLENGVCLDKYSFSLVLKACSQVGLMKEGMQVHGLLCKTDIVSDVFLQNCLVSLFVRCGCVEFARQVFDRMPERDSVSYNSMIDGYVKCGAVGKARELFDGMLVEEKNLITWNSMIGGCVRCEDGLKFAWSLFLKMPERDLVSWNTMIDGCVKHGKMEDAQALFDKMPERDLVSWATMIAGYAKSGDVLAARSLFDEMPRRDTISCNTMMAGYVQNGYCVEALKLFHDMRSATNMLPDDTTLLIVLTAIAQLGHVEDGVVIHRYLMDNGYSLSGNLGVALIDMYSKCGSIDSAISVFENIEQKCIDHWNAVIGGLAVHGMGVMAFDFLMEMERLSIIPDDITFIGLLSACRHAGMLKEGLICFELMKKVYKLEPKVQHYGCMVDMLSRAGHVEEAMKLIEKMPIEPNDVIWKTLLSACQSYEIFSIGEPIAQQLIQLNSSSPSSYVLLSNIYASLGMWDEVKRVRTKMEEKNLKKIPGCSWIELGGIVHQFSVQDRTHPQQAEYGVLLNHSPSWGVCTVAALPYKRSPPSWLKIASQDVEENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1408 771 SUPERFAMILY S15/NS1 RNA-binding domain 686 762 IPR009068 -
Lja3g1408 771 Gene3D - 703 771 - -
Lja3g1408 771 CDD Ribosomal_S15p_S13e 690 763 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lja3g1408 771 Gene3D - 655 702 - -
Lja3g1408 771 Pfam Ribosomal S13/S15 N-terminal domain 635 680 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lja3g1408 771 Pfam PPR repeat 91 120 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 493 516 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 191 217 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 256 285 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 393 417 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 224 253 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 287 315 IPR002885 -
Lja3g1408 771 Pfam PPR repeat 163 188 IPR002885 -
Lja3g1408 771 Hamap 30S ribosomal protein S15 [rpsO]. 622 769 IPR023029 -
Lja3g1408 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 88 122 IPR002885 -
Lja3g1408 771 SMART Ribosomal_S13_N_2 624 680 IPR012606 GO:0003735|GO:0005840|GO:0006412
Lja3g1408 771 Gene3D Tetratricopeptide repeat domain 219 284 IPR011990 GO:0005515
Lja3g1408 771 Gene3D Tetratricopeptide repeat domain 19 152 IPR011990 GO:0005515
Lja3g1408 771 Gene3D Tetratricopeptide repeat domain 285 374 IPR011990 GO:0005515
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 174 216 - -
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 239 623 - -
Lja3g1408 771 Gene3D Tetratricopeptide repeat domain 153 218 IPR011990 GO:0005515
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 239 623 - -
Lja3g1408 771 ProSitePatterns Ribosomal protein S15 signature. 718 748 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lja3g1408 771 SMART Ribosomal_S15_2 690 769 IPR000589 GO:0003735|GO:0005840|GO:0006412
Lja3g1408 771 Gene3D Tetratricopeptide repeat domain 389 629 IPR011990 GO:0005515
Lja3g1408 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 316 346 IPR002885 -
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 174 216 - -
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 170 - -
Lja3g1408 771 Pfam E motif 540 597 IPR046848 -
Lja3g1408 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 254 288 IPR002885 -
Lja3g1408 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 189 223 IPR002885 -
Lja3g1408 771 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 170 - -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 287 316 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 191 217 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 256 287 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 493 516 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 163 189 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 318 352 IPR002885 -
Lja3g1408 771 TIGRFAM PPR: pentatricopeptide repeat domain 91 123 IPR002885 -
Lja3g1408 771 Pfam PPR repeat family 316 363 IPR002885 -
Lja3g1408 771 Pfam PPR repeat family 421 464 IPR002885 -
Lja3g1408 771 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 555 589 IPR002885 -
Lja3g1408 771 Pfam Ribosomal protein S15 694 763 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1408 Lja-Chr3 14949573 14958915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g1408 95 623 Glycoside Hydrolase AT3G49170 25.888 2.41e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja3g1408 - - ccaj:109819180 1023.08