Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02100 ATGAAGCTCGTTTGGTCTCCCGAAGATGCCTTGAAAGCTTACATAGACACAGTTAAATCATGTGAGAAATTGAAGGAAACCGGGGTAGCTGAGTTGCTATCAGCCATGGCAGCAGGGTGGAACACAAAGTTCATAGTGGAGTCATGGTCCTACGGCGGCGCCATAGCCGCGAGCGTAGGCCTAGCAGTTGCAGCTCGCAACACGGGTGCAAGGCACGTGTGCATAGTCCCGGACGAGCGTTCAAGGTTGCAGTACACGAAGGCCCTggcggaggcgggggtgtcggcgccggcggaggtggtggccggggaggcggaggcggcggtggCGCGGCTCTCGGGGCTGGACTTCCTGGTGGTGGACTGCAGGCGGAGGGAGTTCGCTAGGGTTCTGAGGGTGGCAAAGGTGAGTCCAAGAGGTGCTGTTTTGGCATGCAAGAATGCATGGCACAGAAACTCTTGTGGCGGCTTCAGATGGAGCGTGGTTCTCCAAAGGGGTGTGCGTGTGGTTAGGTCGGTTTTCCTCCCTGTTGGCAAGGGTTTGGATATTGCATACATAGGAAGTGGTAGTAGAACTCTTCCACCACCACCAACTTCTTCGAAGGCTCCTAGCCGATGGATCAAGCACATAGATCAACAATCTGGAGAAGAACACCTTTTCCGAGAGTCATGA 672 0.4851 MKLVWSPEDALKAYIDTVKSCEKLKETGVAELLSAMAAGWNTKFIVESWSYGGAIAASVGLAVAARNTGARHVCIVPDERSRLQYTKALAEAGVSAPAEVVAGEAEAAVARLSGLDFLVVDCRRREFARVLRVAKVSPRGAVLACKNAWHRNSCGGFRWSVVLQRGVRVVRSVFLPVGKGLDIAYIGSGSRTLPPPPTSSKAPSRWIKHIDQQSGEEHLFRES 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02100 223 Gene3D Vaccinia Virus protein VP39 6 186 IPR029063 -
Cca01g02100 223 PANTHER ANKYRIN REPEAT/KH DOMAIN PROTEIN (DUF1442) 1 221 - -
Cca01g02100 223 PANTHER DUF1442 FAMILY PROTEIN 1 221 IPR009902 -
Cca01g02100 223 Pfam Protein of unknown function (DUF1442) 1 221 IPR009902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02100 Cca-Chr1 48354894 48356415 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02100 - - gmx:100794419 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02100 01 48354894 48356415 Cca01g02100 01 48354894 48356415 ECH