Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g2596 ATGGCAGCTTCTAATTCCTCATCCACAAATGAGGAACAAGAGGCTTTGCGTCAGAGCAGATGGGGAGAAGGCCGAAATATCTCAGAATGTTGTAAGTGGAATGGTATTGTGTGTAATGAAGCTCAAAGTGTTACAGAGATTTCAACTAGGCAATATTTTTACATTCCTCCAACAGAAGCTCATATTCAGAATTTCAATGTGACAGCATTCCCTAATTTAATCCGTCTAGAGCTTAGTGGGTTGGGACTCAAAGGAAACATCCCATCTGAAATAAGCTCTCTTAAAAAGCTTATCCATCTTGACCTGTCCTCTAATTGTCTACAAGGTGAGTTGCCTCGTTCACTTTCAAGTCTCACTCATCTTGAGACACttaatatttctaacaattttCTTACTGGTGTGATCCCTCCCACTATGGGTCAATTGAACAATTTGACCGTACTCTCCCTTGATTCAAACCAAATTGAAGGCCACATTCCTGCAGAACTAGGGAGTTTAAAAGGTTTAGTGTGGTTAACTCTTTCAAATAACTCACTCAATGGCTCAATCCCTTCTACCTTAGGGCACTTGATCCACCTCAAAGTTTTGGATCTTTCTCATAATAAGATTTTTGGTGTTATACCAGAGGGGATATCTGCACTGACACAACTAACAAATGTTCAACTATCTTGGAATCAAATAACTGGTTTCATTCCATCTGGGATTGGACAAATCCCAAGACTTGGAATTTTAGATATTTCCAACAATCAGCTTGAGGGGCCTATCCCATATGGTGTTCTGAACAATTGTAGTTATCTGCAGCTAAGCAACAACTCTTTAAATGGAAGCATTCCTTCTCAAATAGGCAATATTTCATATCTAGATCTCAGTTATAATGACCTCACAGGCAACATACCTGAGGGACTCCATTCTGTGCCTCACCTTAATTTGTCTTACAATTCCTTTAATGATTCGGATTACAATTTTTGTGGTTTTCCAAAAGACTCATTAATTGGTTTTGGGTTGAGGGAAGATTGTAGTGAAAGTGATGTGCAAATGGTGGAGGCAGAGACCTTGATTATGATTGGAGAGAGGGCCCACGGCTCGTTCAAGCGCTCTCTCTCTAGAACTTTCCTTTCTCAAACTCGCACCTCGTCAACACCACAATCTCGCGCTCTCCAACGCGATCCGTGTTCAATTTCCTCAAAATCAGACGCGATGATGGCTGAGGATCTCGGCGTGGAAGCTAAGGAGGCAGCGGTTCGCGAGGTCGCGAAGCTGTTGCCTCTTCCGGAGCTTCTTCAATCGATCTCATCCATCAAAGCTGATTACATTTCGCGCCAGCAGGCCAATGATGCACAGCTTAGTACAATGGTTGCAGAACagGTTGAACAGTCACAGGCAGGACTAAAATCACTCTCCTTCTCTGAGAAGACAATAAATCAGCTTCGTGAAAACTTTGTGTCCATTGAGAAGTTATGTCAGGAATGCCAAACATTAATTGACAACCATGATCAGATAAAGATACTTAGCAATGCAAGAAATAACTTAAACACAACCTTGAAGGATGTTGAAGGTATGATGTCTATCTCTGTTGAGGCAGCAGAGGCTCGGGATTCTTTGAGTGATGACAAAGAAATTGTCAACACTTTCGAGAGGTTAACAGCTTTGGATGGAAAGCGAAGGTTTGCATTAGCAGCTGCGGGATCTCACAAGGAAGAGGTTGGAAGGCTAAGAGAATATTTTGAAGATGTAGATCGAACCTGGGAGACCTTTGAGAAAACACTATGGGGCCACATTtccaatttttataaactatctAAAGAAAGCCCACAGACTTTAGTTCGTGCTTTACGGGTTGTTGAAATGCAAGAGATCCTTGATCAACAGATTGCAGAAGAAGCAGCAGACGCTGAAGGGGATGGAGCAATGGCATCACTTGCAATTCCTCATAAGAGTGGCATAAAATCTACAACTGCAATGGCttcttcaaaaaatttaatgcaGCAAAAATTGAAAGTTCAGGGGAAAGGCTATAAGGATAAATGCTATGAGCAAATAAGGAAGACTGTAGAAGGACGGTTTAACAAGCTTCTCAATGAGCTTGTGTTTGAGGACCTGAAAGCTGCTTTAGAGGAAGCACGAGCGATTGGGGAAGAACTTGGAGATATCTATGACTACGTAGCCCCCTGCTTTCCCCCAAGATACGAAATATTCCAACTAATGGTAAATCTGTACACTGAGAGGTTTATTCAGATGCTAAGATTGCTCAGTGACAGGgcaaatgaattaacaaatattGAGATATTAAAGGTAACTGGTTGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTGGATGAGTCTCTAGCTCAAGTGTGCTCGGAGAGTGGTGCAATGGATCCTGTTATGAACTCTTATGTTGAGAGAATGCAAGCTACAACTAGGAAATGGTACTTGAATATTTTGGAGGCTGATAGAACACAGCCCCCAAAGAAAACTGAAGATGGGAAGCTATATACCCCAGCTGCTGTTGATCTGTTCAGGATACTTGGTGAGCAAGTACAAATTGTTCGGGATAATAGCACTGATGTCATGTTATACCGAATTGCCTTGGCAACCATTCAGGTGATGATTGATTTTCAAGCAGCTGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTAtgATTAACAACAATTTGCGCTGCTATGACCTTGCAATGGAGCTAAGTAATAGCACCATAGAAGCCCTTCCACAGAACTATGCTGAGCAGGTTAATTTTGAAGATACCTGTAAGGGTTTTCTTGAGGTTGCTAAGGAAGCTGTGCATCAAACTGTTAGTGTCATATTTGAAGATCCTGGCGTCCAGGAGTTGCTGGTCAAGCTATACCAGAaagAATGGAGTGAGGGGCAGGTTACTGAATACTTGGTTGCAACATTTGGTGATTATTTTGGTGATGTAAAAATGTACATTGAAGAAAGATCTTTCAGGAGATTTGTTGAAGCCTGTCTTGAAGAAACAGTGGTTGTTTATGTTGATCGTCTTTTAACACAGAAAAATTACATTAAGGAAGAAACTATTGAAAGGATGAGGCTAGATGAGGAGGTTATCATGGACTTTTTTAGGGAACATATCAGTGTTTCTAAAGTTGAAAACAGAGTGAGTGTGCTTAGCGACTTGAGGGAACTTGCTTCAGCAGAGAGCCTGGATACCTTTACACTCATCTATACAAATATACTTGAACATCAACCTGACTGCCCGCCTGAAGTTGTGGAGAAACTTGTTGGTCTACGAGAAGGCATTCCTCGGAAGGATGCCAAGgaggTCATTCAAGAGTGCAAAGAGATATATGAGAATTCACTTATTGATGGAAGACCTCCAAAGGCAGGTTTTGTTTTTCCACGGGTGAAGTGCTTAACAGCATCTAAGGGTGGGCTTTGGCGTAAACTCACTTGA 3468 0.4092 MAASNSSSTNEEQEALRQSRWGEGRNISECCKWNGIVCNEAQSVTEISTRQYFYIPPTEAHIQNFNVTAFPNLIRLELSGLGLKGNIPSEISSLKKLIHLDLSSNCLQGELPRSLSSLTHLETLNISNNFLTGVIPPTMGQLNNLTVLSLDSNQIEGHIPAELGSLKGLVWLTLSNNSLNGSIPSTLGHLIHLKVLDLSHNKIFGVIPEGISALTQLTNVQLSWNQITGFIPSGIGQIPRLGILDISNNQLEGPIPYGVLNNCSYLQLSNNSLNGSIPSQIGNISYLDLSYNDLTGNIPEGLHSVPHLNLSYNSFNDSDYNFCGFPKDSLIGFGLREDCSESDVQMVEAETLIMIGERAHGSFKRSLSRTFLSQTRTSSTPQSRALQRDPCSISSKSDAMMAEDLGVEAKEAAVREVAKLLPLPELLQSISSIKADYISRQQANDAQLSTMVAEQVEQSQAGLKSLSFSEKTINQLRENFVSIEKLCQECQTLIDNHDQIKILSNARNNLNTTLKDVEGMMSISVEAAEARDSLSDDKEIVNTFERLTALDGKRRFALAAAGSHKEEVGRLREYFEDVDRTWETFEKTLWGHISNFYKLSKESPQTLVRALRVVEMQEILDQQIAEEAADAEGDGAMASLAIPHKSGIKSTTAMASSKNLMQQKLKVQGKGYKDKCYEQIRKTVEGRFNKLLNELVFEDLKAALEEARAIGEELGDIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANELTNIEILKVTGWVVEYQDNLIGLGVDESLAQVCSESGAMDPVMNSYVERMQATTRKWYLNILEADRTQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRDNSTDVMLYRIALATIQVMIDFQAAEKKRLEEPASEIGLEPLCAMINNNLRCYDLAMELSNSTIEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELLVKLYQKEWSEGQVTEYLVATFGDYFGDVKMYIEERSFRRFVEACLEETVVVYVDRLLTQKNYIKEETIERMRLDEEVIMDFFREHISVSKVENRVSVLSDLRELASAESLDTFTLIYTNILEHQPDCPPEVVEKLVGLREGIPRKDAKEVIQECKEIYENSLIDGRPPKAGFVFPRVKCLTASKGGLWRKLT 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g2596 1155 Gene3D - 792 961 - -
Ssu4g2596 1155 Gene3D - 967 1129 IPR042532 -
Ssu4g2596 1155 MobiDBLite consensus disorder prediction 1 20 - -
Ssu4g2596 1155 MobiDBLite consensus disorder prediction 1 15 - -
Ssu4g2596 1155 Pfam Exocyst complex component Sec6 575 1138 IPR010326 GO:0000145|GO:0006887
Ssu4g2596 1155 Pfam Leucine Rich Repeat 96 118 IPR001611 GO:0005515
Ssu4g2596 1155 SUPERFAMILY L domain-like 27 316 - -
Ssu4g2596 1155 Pfam Leucine rich repeat 192 251 IPR001611 GO:0005515
Ssu4g2596 1155 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Ssu4g2596 1155 PANTHER EXOCYST COMPLEX COMPONENT SEC6-RELATED 400 1153 IPR010326 GO:0000145|GO:0006887
Ssu4g2596 1155 Gene3D Ribonuclease Inhibitor 4 157 IPR032675 -
Ssu4g2596 1155 Gene3D Ribonuclease Inhibitor 158 258 IPR032675 -
Ssu4g2596 1155 Gene3D Ribonuclease Inhibitor 259 339 IPR032675 -
Ssu4g2596 1155 PANTHER BNACNNG07830D PROTEIN 400 1153 - -
Ssu4g2596 1155 SMART LRR_typ_2 190 214 IPR003591 -
Ssu4g2596 1155 SMART LRR_typ_2 94 118 IPR003591 -
Ssu4g2596 1155 SMART LRR_typ_2 142 166 IPR003591 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g2596 71 313 Receptor kinase-like Gene Family AT2G15080 28.000 5.53e-16 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g2596 K06110 - gmx:100790857 1430.23