Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco1g01539 ATGAAAATAGGTCCGTTTGGATTCAAGAGTGAGGAGTATGATGGGAGCGTGCCAAATTTGGTCTTGAGGCCACAGCCCTGGACGAAGGTATGTAGCATTATTTTTGTAGATTTGCCTTTTGGAACTGGCTTCTCGTACGCAAAAAATCTCACTGCTAATAGGAAGGACTGGAAGTTAGTTCACCATACCCATCAATTTCTTAGGAAGTGGCTGATTGATCACCCAGAATTTCTTTCAAATGACTTTTACATGGGAGCTGGTTCATTTTCTGGCATTCCTGCCCCTGCCATTGTTCAAGAAATTTCAAAGGGAAATGCAATAGGTCTTCAACCACCCATAAATCTCCAGGGATATCTACTAGGGAACCCCATGACAACACGCAAAGAAAAAAATGACGAAATCCCATTTGCTCATGGAATGGGGCTTATTTCTGATGAACTCTATGAGTCACTGAAGAGAAATTGCAAAGGAGAATACATAGATGTAGATTCTAGAAATGAATTGTGTTCAAGAGATCTCAACTACTATGATGAGTGCCTTTCTGGAATTAATGAATTCAACATTTTGGATCTCTATTGCAAAGATGATTCTACGAAGAATCATGAAGGTCCATGGAGAAGATCTCTGACTCAAAAGTTTGAGTCCTCTCTCAATTCTCATCTCACCGAGTTAGACATAAGATGCCAAATATATGGTTTTTTCCTTGCCACTCAATGGGCCAATGATGAGAGTGTTCGCAAAGCACTGCACATCCGAGAGGGAACAAAAGGCAAATGGGAACGTTGTTGGACTGGTAATTTTGAGCATGAGATCTCTAGCAGCTTCGAATTTCATTTAAATCTCAGTGCTAAAGGATATCGTTCTTTAATATATAGTGGGGATCATGATGCAGTTGTTCCTTTCATGTCGACTCAAGCATGGATCAGAGCTCTAAACTACTCCATTGTAGACGATTGGAGGCCATGGCTTCTAGAAGGCCAAGTTGCAGGGGTTCAGGACACAGCTCCTGAGTACAAGCCTCATGAAGGTTACGCCATGTTCAGCAGGTGGATAGCTAGTAAGCCTTTGAAGTTAACGCAGTCCAGACATTCACTGTCGCAAACAACGTTTGAGTTTGTTTTCAGATTCCAGATTCTTCTTTTCGTCTTTTCTTCCAAATATCTATTTTCGATTTCTTTTATATTCCCCTTTTGTCTTTACCATTTTCAATACATTCACAGTCCCAATTACACTACTGTTACGTCCATGGCCGATTCGTCCCCAAGAACCGTGCTTGTAACTGGATCTGGTGGCCGCACAGGACAAATTGTGTATAAAAAATTAAAAGAGAAGCCAAATCAGTATGTTACCAGAGGCCTTGTTAGAACAGAAGAAAGCAAACAGAAAATTGGCGGTGCAAATGATGTTTTTGTTGGGGATATCAGAGATGCTGGAAGTATTACTCCTGCTTTTCAAGGTATAGATTCTCTCATAATCCTCACGAGTGCAGTTCCACAAATGAAGCCTGGGTTTGATCCAACAAAAGGTGAAAGGCCTGAGTTCTATTTTTCTGATGGCGCATATCCTGAACAGGTTGACTGGATTGGGCAGAAGAATCAAATAGATGCTGCCAAGGCAGCAGGAGTGAAGCATGTTGTGTTGGTTGGGTCTATGGGCGGAACAAACACTAATCATCCTCTGAACAGCTTGGGAAATGGGAATATATTGATTTGGAAGAGAAAGGCTGAACAATATCTGGCTGATTCTGGCGTTCCATACACAATCATAAGGCCTGGTGGTTTGTTAGATAAAGAAGGAGGTATTAGGGAACTCATTGTGGGAAAAGATGACGAGCTTCTTCAGACTGAAAACAAAGCCGTTCCTCGAGCTGATGTTGCCGAAGTCTGCATTCAGGCACTGAATTTTGAGGAGGTTCAATTCAAGGCTTTTGACTTGGCATCAAAACCGGAGGGAGTAGGTACCCCAACAAAGGACTTCAAGGCTTTGTTTTCCAATATCACAGCTCGTTTTTGA 2013 0.4188 MKIGPFGFKSEEYDGSVPNLVLRPQPWTKVCSIIFVDLPFGTGFSYAKNLTANRKDWKLVHHTHQFLRKWLIDHPEFLSNDFYMGAGSFSGIPAPAIVQEISKGNAIGLQPPINLQGYLLGNPMTTRKEKNDEIPFAHGMGLISDELYESLKRNCKGEYIDVDSRNELCSRDLNYYDECLSGINEFNILDLYCKDDSTKNHEGPWRRSLTQKFESSLNSHLTELDIRCQIYGFFLATQWANDESVRKALHIREGTKGKWERCWTGNFEHEISSSFEFHLNLSAKGYRSLIYSGDHDAVVPFMSTQAWIRALNYSIVDDWRPWLLEGQVAGVQDTAPEYKPHEGYAMFSRWIASKPLKLTQSRHSLSQTTFEFVFRFQILLFVFSSKYLFSISFIFPFCLYHFQYIHSPNYTTVTSMADSSPRTVLVTGSGGRTGQIVYKKLKEKPNQYVTRGLVRTEESKQKIGGANDVFVGDIRDAGSITPAFQGIDSLIILTSAVPQMKPGFDPTKGERPEFYFSDGAYPEQVDWIGQKNQIDAAKAAGVKHVVLVGSMGGTNTNHPLNSLGNGNILIWKRKAEQYLADSGVPYTIIRPGGLLDKEGGIRELIVGKDDELLQTENKAVPRADVAEVCIQALNFEEVQFKAFDLASKPEGVGTPTKDFKALFSNITARF 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco1g01539 670 FunFam Uncharacterized protein At5g02240 420 670 - -
Phco1g01539 670 Pfam NAD(P)H-binding 428 634 IPR016040 -
Phco1g01539 670 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 421 647 IPR036291 -
Phco1g01539 670 CDD SDR_a5 423 645 - -
Phco1g01539 670 Pfam Serine carboxypeptidase 3 334 IPR001563 GO:0004185|GO:0006508
Phco1g01539 670 PRINTS Carboxypeptidase C serine protease (S10) family signature 36 46 IPR001563 GO:0004185|GO:0006508
Phco1g01539 670 PRINTS Carboxypeptidase C serine protease (S10) family signature 70 95 IPR001563 GO:0004185|GO:0006508
Phco1g01539 670 PRINTS Carboxypeptidase C serine protease (S10) family signature 23 35 IPR001563 GO:0004185|GO:0006508
Phco1g01539 670 Gene3D - 420 670 - -
Phco1g01539 670 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 417 670 IPR044163 GO:0016491
Phco1g01539 670 SUPERFAMILY alpha/beta-Hydrolases 2 356 IPR029058 -
Phco1g01539 670 Gene3D alpha/beta hydrolase 1 366 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco1g01539 Phco-Chr1 52301881 52320101 Tandem