Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01688 ATGGCAGATTCTTCCCCGAAAACCGTGCTTGTAACCGGAGCTGGTGGTCGCACAGGACAAATTGTGTATAAAAAATTAAAAGAGAGGTCAAACCTGTATGTTACCAGAGGCCTTGTTAGAACACAAGAAAGCAAACAGAAAATTGGTGGTGCAGATGATGTTTTTGTTGGGGATATCAGAGATGCAGGAAGTATTACACCTGCATTACAAGGTACAGATGCTCTCATTATTCTCACAAGTGCAGTACCACAAATGAAGCCTGGATTTGATCCAACCAAAGGTGGAAGGCCAGAGTTCTATTATGCTGATGGTGCATATCCTGAACAGGTTGACTGGATTGGGCAGAAAAATCAAATAGATGCTGCCAAGGATGCAGGAGTTAAGCATATTGTGTTGGTTGGGTCTATGGGTGGAACAAACCCTAATCATCCTTTGAACAGCTTGGGAAATGGGAATATATTGATTTGGAAGAGGAAGGCTGAACAATATCTGGCTGATTCTGGTGTTCCATACACGATCATAAGGCCTGGTGGCTTGCTAGATAAAGAAGGAGGCCTAAGGGAACTCATTGTGGGAAAGGATGACGAGCTTCTTCAGACTGAAACCAAAGCCATACCTAGAGCTGATGTTGCTGAAGTCTGCGTTCAGGCACTAAACTTTGAGGAGGTTAAATTCAAGGCTTTTGACTTGGCATCAAAACCTGAGGGAGAAGGAGGCAAGGCCAACATAGCAGTGGCGGTCATGGCCACTCTTTTTCTACCTCTCAACCCCTATTCTCCCACCCCAATTCGAAACCCTAATCTCTCTTCTCTTCCTTTCCAAACCCTAAGACATCATCGCACCCCATTCCTTCGTGCATTTAACGAAGATTCCAATCCTGAAACCGTCCAAGATGGCGAGGTGAACAATTTGGGAGTCAAAGCTGCACTGTCCATGTTGAGATTCTACAAGAGGGAAATTTCACCAATTTTGCCAAAGAGTTGTCGATACATTCCAACATGCAGTGAGTATTCCATGCAGGCTTATAAGAAATATGGAGTGATGAAGGGTACAGTTTTGACTGCATGGCGTTTGTGTCGTTGCAATCCCCTTGGTGGGCATGGTTATGATCCACCTAGATGGTTTGGTGAGGTTAGTCCACTGGAAGATGCTGATGACGACTGA 1164 0.4476 MADSSPKTVLVTGAGGRTGQIVYKKLKERSNLYVTRGLVRTQESKQKIGGADDVFVGDIRDAGSITPALQGTDALIILTSAVPQMKPGFDPTKGGRPEFYYADGAYPEQVDWIGQKNQIDAAKDAGVKHIVLVGSMGGTNPNHPLNSLGNGNILIWKRKAEQYLADSGVPYTIIRPGGLLDKEGGLRELIVGKDDELLQTETKAIPRADVAEVCVQALNFEEVKFKAFDLASKPEGEGGKANIAVAVMATLFLPLNPYSPTPIRNPNLSSLPFQTLRHHRTPFLRAFNEDSNPETVQDGEVNNLGVKAALSMLRFYKREISPILPKSCRYIPTCSEYSMQAYKKYGVMKGTVLTAWRLCRCNPLGGHGYDPPRWFGEVSPLEDADDD 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01688 387 TIGRFAM TIGR00278: putative membrane protein insertion efficiency factor 311 372 IPR002696 -
Cca01g01688 387 SMART Haemolytic_2 305 372 IPR002696 -
Cca01g01688 387 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 3 240 - -
Cca01g01688 387 Pfam Putative membrane protein insertion efficiency factor 308 371 IPR002696 -
Cca01g01688 387 Hamap Putative membrane protein insertion efficiency factor [yidD]. 305 373 IPR002696 -
Cca01g01688 387 Pfam NAD(P)H-binding 13 219 IPR016040 -
Cca01g01688 387 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 232 IPR036291 -
Cca01g01688 387 CDD SDR_a5 8 230 - -
Cca01g01688 387 Gene3D - 5 251 - -
Cca01g01688 387 PANTHER NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED 3 240 IPR044163 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01688 Cca-Chr1 38752349 38767026 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01688 - - twl:119998315 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g01688 01 38752349 38767026 Cca01g01688 01 38752349 38767026 ECH