Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0052 ATGGGTAAGGAGGAAGATGTGAAGGAGAGCAAGAAAGTGGTATTAGGTTGGGCAATTCATGGTGTGAGAAAGATGAGGACTACGCCTGAGGTCAACGGGAATAATGTAGCGGACGAAGAAACACTCGGCGGCTCAGTTCATTTCGGCACGGCGGAGGCCGTCGAATACGTCCGTTCGCTCACCGACGTCGGCGCCATGACGCGCCTCCTCCATGAGTGCATCGCTCACCAGAGAGCCGTCGACATCGAACTCGACGAGGTTCTCTCGCAGCGCACTGACCTCGACCGTCACCTCCTCCAGCTCCAGCGCTCCTCCGATGTCCTTGACATCGTCAACTCCGACGCCGACTACATGCTCTCCAACGTGGCTTCCACCTCCGACCTCGCTGATCAGGTCAGCAGCAAGGTCCGCGAGCTTGACCTGGCGCAGTCGCGCGTCCGCAACGCGCTCCTCCGCATCGACGCCATTGTGGAGCGCGCCAACTCCCTCGAAGGCGTCCACCGTGCCCTCGAGGCAGAGGACTATGAGTCTGCCTCCCGCTACGTCCAGACCTTCCTCCAAATTGACGCGGAGTACAAAGATTCCGGCTCCGATCAGCTTCAGAGGGATCGCTTGCTGGCAGCAAAGAAGCAGTTGGAGGGAATTGTAAGGAAGAAGCTCTCTGCCGCAGTGGATCAACGCGACCACCCTGCCATTCTCAGGTTCATTCGACTCTTCACCCCGCTGGGTGTGGAGGAGGAGGGATTGCAGTTGTATGTTGGGTACTTGAAGAAAGTGATTGCAATGAGGTCAAGAATGGAGTTTGAGCAATTGGTGGAGACAATGGATCAGCGTAATGTCAATTTTGTTGGTTGTTTGACCAATTTGTTCAAGGACATTGTGTTGGCGATTGAGGAGAACAGTGAGATCTTGAGTGGTCTTTGTGGGGAGGATGGTATTGTATATGCCATCTGTGAGCTTCAGGAGGAGTGTGATTCTCGCGGTTCTGTGATTTTGAACAAGTATATGGAGTATAGGAAGTTGGCTAAGTTGTCCTCTGAGATAAATGCTCACAACACTAATTTGCTTGCTGTTGGAGGAGGTACTGAGGGTCCTGACCCACGAGAGGTTGAGTTATATTTGGAGGAGATTCTCTCCCTTATGCAGCTTGGTGAAGATTACACTGAATTCATGATTTCAAAGATCAAAGGGCTTACTTCTGTTGACCCTGAGTTGCTTCCCCGTGCCACCAGAGCTTTTCGGAGTGGCAGTTTCAGCAAGGTTGCACAAGATTTAACTGGATTTTATGTGATTTTGGAGGGATTTTTCATGTTGGAAAACGTCAGGAAAGCAATAAGGATTGATGAACACGTGCCTGACAGCCTTACCACTTCTATGGTGGATGATGTATTTTATGTATTGCAGAGTTGCCTGCGGAGGGCAATATCCACTTCCAATATCAGTTCTGTTGTTGCCGTTTTGAGTGGTGCCAGCAGCTTACTCGGTAATGAATATAATGAAGCCTTGCAGCAAAAAATAAGAGAGCCAAACCTTGGTGCAAAGTTGTTCTTTGGTGGCGTTGGTGTGCAAAAGACAGGGACAGAAATTGCAACAGCTTTGAATAATATGGATGTTAGCAGTGAGTATGTTCTGAAGCTAAAACATGAAATTGAAGAACAGTGTGCTGAGGTGTTTCCTGCACTAGCTGATCGAGAAAGGGTAAAATCTTGTTTGACTGAGTTGGCAGATAGCAGCAATGCTTTCAAGCAAGCTTTGACTGCTGGCATAGAACAACTTGTGTCAACCATTACACCTCGATTAAGACCAATATTAGACAGCGTTGGAACAATTAGCTATGAGCTTTCGGAGGCTGAGTATGCAAATAATGAGGTGAATGATCCATGGGTTCAGAGACTTCTCCATGCTGTTGAGACGAATGTGGCATGGCTGCAGCCACTAATGACAGCTAACAATTATGACACGTTTGTTCATTTGATTATTGACTTCATTGTGAAAAGGCTAGAAGTTATTATGATGCAAAAAAGATTTAGTCAACTTGGCGGTCTTCAACTTGACCGAGATGCTAGAGCTTTGGTAAGTCACTTCAGTGTCATGACACAGAGAACTGTCAGAGACAAGTTTGCACGTCTTACTCAAATGGCAACAATTCTAAATTTAGAAAAGGTTTCTGAGATTCTAGATTTCTGGGGTGAGAACTCTGGACCTATGACCTGGAGATTAACTCCAGCAGAAGTTAGGCGTGTATTGGGTCTGCGGATTGATTTTAAACCAGAAGCAATAGCTGCTGTGAAGTTGTAA 2298 0.4765 MGKEEDVKESKKVVLGWAIHGVRKMRTTPEVNGNNVADEETLGGSVHFGTAEAVEYVRSLTDVGAMTRLLHECIAHQRAVDIELDEVLSQRTDLDRHLLQLQRSSDVLDIVNSDADYMLSNVASTSDLADQVSSKVRELDLAQSRVRNALLRIDAIVERANSLEGVHRALEAEDYESASRYVQTFLQIDAEYKDSGSDQLQRDRLLAAKKQLEGIVRKKLSAAVDQRDHPAILRFIRLFTPLGVEEEGLQLYVGYLKKVIAMRSRMEFEQLVETMDQRNVNFVGCLTNLFKDIVLAIEENSEILSGLCGEDGIVYAICELQEECDSRGSVILNKYMEYRKLAKLSSEINAHNTNLLAVGGGTEGPDPREVELYLEEILSLMQLGEDYTEFMISKIKGLTSVDPELLPRATRAFRSGSFSKVAQDLTGFYVILEGFFMLENVRKAIRIDEHVPDSLTTSMVDDVFYVLQSCLRRAISTSNISSVVAVLSGASSLLGNEYNEALQQKIREPNLGAKLFFGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEEQCAEVFPALADRERVKSCLTELADSSNAFKQALTAGIEQLVSTITPRLRPILDSVGTISYELSEAEYANNEVNDPWVQRLLHAVETNVAWLQPLMTANNYDTFVHLIIDFIVKRLEVIMMQKRFSQLGGLQLDRDARALVSHFSVMTQRTVRDKFARLTQMATILNLEKVSEILDFWGENSGPMTWRLTPAEVRRVLGLRIDFKPEAIAAVKL* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0052 765 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 53 765 - -
Vra5g0052 765 Pfam RINT-1 / TIP-1 family 626 722 IPR007528 GO:0006888|GO:0006890|GO:0070939
Vra5g0052 765 Pfam COG4 transport protein 207 505 IPR013167 -
Vra5g0052 765 Gene3D - 519 596 - -
Vra5g0052 765 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 53 765 - -
Vra5g0052 765 Gene3D - 597 765 - -
Vra5g0052 765 SMART cog4.2seq4 205 507 IPR013167 -
Vra5g0052 765 Coils Coil 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0052 Vra-Chr5 417210 421409 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0052 K20291 - gmx:100778820 1341.25