Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0811 ATGCACAGACAATTTCTCCACTACTCAAAAACCCTAATAACCTTCACTTCACACCATATCACATCACCATTACCAACCCATCACTTTCAAACCCAAAAGCTTCAATCTTTTCATTCCCCAAATCACGACACTTCAATTTCCCCAATTGGGTCACCAACCAGAGTTCAAAAACTCATTGCCTCACAACAAGATCCTCTTCTTGCAAAACAAATATTTGACTATGCTTCAACTGTTCCCAATTTCAGACACACTTATTCCACTTACCTTATCCTTGTTCTCAAATTGGGTCGCTCCAAAAACTTCACTCTCCTTGATCAAATCATAATTCGCTTGAAAAATGACCCTTCTTACAAAATCACACATACCCTTTTCACTTACTTGATCAGAGTCTATGGTGAAGCTGATTTACCTGAAAAAGCACTCAAAATGTTTTACACCATGATGCAATTCAATCTCAAACCTTTAACCAAACACCTTAACTGCATTCTTGAGATTCTTGTTTCGCATAGGAACTATGTTAGGCCTGCTTTTGATTTGTTTAGGGATGCTCATAAACATGGGGTTGTAGCGAATACTAGGTCTTATAATGTTTTGATGAGGGCTTTTTGTTTGAATGGGGATGTTAGTATTGCATATATGCTGTTCAATAAAATGTTTAAGAGAGATGTTCTTCCGGATATCGAGTCTTACCGGATTTTGATGCAGGCGTTGTGTAGGAGGAATCAAGTGAATGGTGCTGTTGATTTGTTGGAGGATATGTTGAACAAAGGGTTTGTTCCTGATTCTTTGACTTATACAACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGCTTAGAGAGGCTTACAAGCTTCTTTGCAGGATGAAGGTTAAAGGGTGTAATCCTGATATACTTCATTACAATACAGTTATTTTGGGGTTCTGTAGAGAAGGGCGAGCTCACGATGCTGGTAAAGTTATTGATGATATGCACGTGAATGGTTGCTTGCCTAATCTCGTGTCGTATCGTACTTTGGTTAGTGGTTTGTGTGACATGGGAATGTTTGATGAGGCGAAAAAATATATGGAGGACATGCTGGGCAAAGGTTTTTCTCCACATTTTGCTGTTATCCATGCGTTAGTGAAGGGTTTCTGCAATGTTGGTAGGATTGAGGAAGCTTGTGGAGTTCTCACAAAGTCACTAGAGCATGGGGAAGCTCCTCATACGGATACTTGGATGAACGTAATACGGATGATATGTGAAGATGAGGGTCAGAAAATCAGTGAGGCTATTGATGAAATTCTTAAGATTGAAATAAAAGGTCATACTAGAATAGTTGATGCTGGCATTGGTTTGGAGAACTACTTGATTCGGAAGATACAAGCCAAGTCGAGAGCATTTGTTTCTAAACTGAACACCATGATGTATAGGGAAAACGACACCGTTTCATCCCCAATTGCCGCCATTAATTGTGGCACTCCGGTGGCCGTAGAATACGTGCGATCTCTAACCGAAGTAGGAACAATGACGCGCTTTCTTCACGAGTGCATCGCACACCAAAGAACCTTAGATATTGAACTCGATGATCTCTTATCACAGCGTAACAATCTTCACGAACACCTTCTACATCTTCAACGATCTTCAGAAGTTCTCAACATTGTTAAATCAGACTCTCATTACATGCTTAACAATGTTTCCTCCACTTGTGATCTCGCTGATGACGTCAGCAGGAAGGTGCGTGAGCTAGATCTCGCTCAGTCGCGCGTGAGATCCACGCTGTTAAGGATTGACGCGAACGTGGAGCGAGGGAATTGTTTGGAAGGAGTGTATAGGGCGCTTGATTCGGAGGATTACGAATCTGCGGCTAGGTATGTGCAGGGTTTTCTCAAGATTGATGCTGAGTATAAGGATTGTGGGAATGATGAAAGGGAGAGGGAGAGGTTGATGAGTGCTAAGAAGCAGCTCGAAGGGACTGTGAGGAAGAAGCTCTCAGTCGCAGTAGATCAGAGAGATCACTCTGAGATTTTGAGGTTTATTCAGCTTTATACACCACTAGGGATGGAAGAGGAAGGGTTGCATGTTTATGTTGGGTACTTGAAGAAGGTAATTGGGATGAGATCGAGGATCGAGTTTGAACAATTGATGGAACTGAGAAATAATGGAAGCAATGTTAATGTTAATTTTGTTTTGTGTTTGACTAATTTGTTTAAGGATATTGTGTTGGCGATTGAAGAGAATAATGAGATATTGAGTGGTTTGTGTGGTTTGTGTGGTGAGGATGGGATTGTGTATGCGATTTGTGAGCTGCAAGAGGAATGTGATTCGCAAGGCTCTATGATTTTGAAAAAGTATATGGAATATAGGAAGTTGGCTAAGTTGTCGTCTGAAACCAGTGCACAGAACAGTAATTTATTAGCGGTTGGAGGAGGCGCTGAGGGACCCGATCCACGAAATGTTGAGTTGTACTTGGAGGAAATTCTTTCACTTGTGCAATTAGGTGAGGATTATACGGAGTTCATGATTTCAAAAATCAAGGGTCTTACTTTTGTGAACCCCGAATTGGTCCTACGCACAACGAAGGCTTTCAAGATTGGTAGTTTCAGCAAAGTTGCACAAGATTTAACTGGATTTTATGTGATTCTGGAAGGGTTCTCTATGGTGGAGAATGTTAGGAAAGCTATACGGATTGATGAACAGGTGCCTGATAGCCTTACCACTTCTATGGTGGATGATGTGTTCTATGTCTTGCAGAGTTGTTTGCGAAGGGCAATATCCACTTTGAATGTAAGTTCTGTTAGAGCAGTTTTGAGTGGTGCTAATAATTTATTGATCAATGAGTATCAAGAAGCCTTACAGCAGAAAATAAGGGTGCCAAACCTTGGTGAAAAGTTGTTCTTTGGTGGTGTTGGCGTACACAAAACTGGGACAAAATTTGCAGCAGCTTTAAATAATATGGATGTTAGCAGTGAATATGTTCTGAAGCTGAAGTATGAAATAGAAGAACAGTGTGCTGAGGTTTTTCCTGCACCAACAGATCATGAAAAGGTAAAATCTTGTTTGTCTGAGTTGGGAGAAAGCAGCAATGCTTTCAAGCAAGCCTTGAATGCTGGCATAGAACAACTTGCAGCAAGTATTACACCAAGGATACGACCAGTTTTAGACAGTGTAGGAACAATCAGCTACGAACTTTCCGAGTCCGAGTATGCAGATAATGAAATGAATGACCCATGGGTTCAAAGACTTCTTCATGCCATCGAGACAAACGTGGCATGGATGCAGCCACTGATGACTGCTAACAACTATGACAATCTTGTTCATTTGGTTATTGACTTCATTGTGAAAAGGCTTGAAGTCATTATGATACAGAAAAGATTTAGTCAGCTTGGTGGCCTTCAGCTTGACAGAGATACTAGAGCTTTGGTAAGCCATTTCGGCATAATGACACAGAGAACTGTTAGAGACAAGTTTGCGCGTCTTACTCAAATGGCAACGATTCTTAATTTCGAAAAGGTATCTGAGATTCTAGATTTCTGGGGAGAGAACTCTGGACCTATGACATGGAGATTAACTCCGGCAGAGATCAGCCGCGTATTGGGTCTGCGAGTTGATTTTAAGCCAGAAGCTATAGCTGCTCTAAAGTTGTAA 3624 0.4103 MHRQFLHYSKTLITFTSHHITSPLPTHHFQTQKLQSFHSPNHDTSISPIGSPTRVQKLIASQQDPLLAKQIFDYASTVPNFRHTYSTYLILVLKLGRSKNFTLLDQIIIRLKNDPSYKITHTLFTYLIRVYGEADLPEKALKMFYTMMQFNLKPLTKHLNCILEILVSHRNYVRPAFDLFRDAHKHGVVANTRSYNVLMRAFCLNGDVSIAYMLFNKMFKRDVLPDIESYRILMQALCRRNQVNGAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDILHYNTVILGFCREGRAHDAGKVIDDMHVNGCLPNLVSYRTLVSGLCDMGMFDEAKKYMEDMLGKGFSPHFAVIHALVKGFCNVGRIEEACGVLTKSLEHGEAPHTDTWMNVIRMICEDEGQKISEAIDEILKIEIKGHTRIVDAGIGLENYLIRKIQAKSRAFVSKLNTMMYRENDTVSSPIAAINCGTPVAVEYVRSLTEVGTMTRFLHECIAHQRTLDIELDDLLSQRNNLHEHLLHLQRSSEVLNIVKSDSHYMLNNVSSTCDLADDVSRKVRELDLAQSRVRSTLLRIDANVERGNCLEGVYRALDSEDYESAARYVQGFLKIDAEYKDCGNDERERERLMSAKKQLEGTVRKKLSVAVDQRDHSEILRFIQLYTPLGMEEEGLHVYVGYLKKVIGMRSRIEFEQLMELRNNGSNVNVNFVLCLTNLFKDIVLAIEENNEILSGLCGLCGEDGIVYAICELQEECDSQGSMILKKYMEYRKLAKLSSETSAQNSNLLAVGGGAEGPDPRNVELYLEEILSLVQLGEDYTEFMISKIKGLTFVNPELVLRTTKAFKIGSFSKVAQDLTGFYVILEGFSMVENVRKAIRIDEQVPDSLTTSMVDDVFYVLQSCLRRAISTLNVSSVRAVLSGANNLLINEYQEALQQKIRVPNLGEKLFFGGVGVHKTGTKFAAALNNMDVSSEYVLKLKYEIEEQCAEVFPAPTDHEKVKSCLSELGESSNAFKQALNAGIEQLAASITPRIRPVLDSVGTISYELSESEYADNEMNDPWVQRLLHAIETNVAWMQPLMTANNYDNLVHLVIDFIVKRLEVIMIQKRFSQLGGLQLDRDTRALVSHFGIMTQRTVRDKFARLTQMATILNFEKVSEILDFWGENSGPMTWRLTPAEISRVLGLRVDFKPEAIAALKL* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0811 1207 Gene3D - 961 1037 - -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 296 330 IPR002885 -
Lan4g0811 1207 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 489 1207 - -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Lan4g0811 1207 Pfam PPR repeat 124 151 IPR002885 -
Lan4g0811 1207 Gene3D Tetratricopeptide repeat domain 155 277 IPR011990 GO:0005515
Lan4g0811 1207 Pfam PPR repeat family 225 274 IPR002885 -
Lan4g0811 1207 Pfam PPR repeat family 295 344 IPR002885 -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Lan4g0811 1207 Pfam COG4 transport protein 642 947 IPR013167 -
Lan4g0811 1207 Pfam PPR repeat 187 218 IPR002885 -
Lan4g0811 1207 Gene3D - 1038 1207 - -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 226 260 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 229 262 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 333 365 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 300 331 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 124 154 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 264 297 IPR002885 -
Lan4g0811 1207 TIGRFAM PPR: pentatricopeptide repeat domain 194 227 IPR002885 -
Lan4g0811 1207 Gene3D Tetratricopeptide repeat domain 278 442 IPR011990 GO:0005515
Lan4g0811 1207 PANTHER CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 489 1207 - -
Lan4g0811 1207 SMART cog4.2seq4 641 949 IPR013167 -
Lan4g0811 1207 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 261 295 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0811 Lan-Chr4 10122423 10132183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0811 123 433 Glycosyltransferase AT1G05670 28.526 1.60e-35 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0811 K20291 - gmx:100778820 1837.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0811 4 10122423 10132183 Lan16g1141 16 18465491 18469601 LSH