Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00083 ATGTCTCTCTCCGCTCCCAAGTTTGCGCACCCTCTTCCTCTCCATCACAGATCCAATGGCAGCCCCATGTCTTTCAACACGTCCACTCCCTTCCTTGGATCCACTCAGAAGCTTCGTTTCATCGCCCCCATTAAGCTCAATGCTCGCTCTAATTCCACTGTTGTCTCTGTCTCCGATGCTGTCAAGAACAAGAACCTCAAATCAGCCACAAATCTGCTTATTACGAAAGAGGAGGGCTTGTTGCTCTACGAAGACATGATATTAGGCAGGTTCTTTGAAGACATGTGTGCCCAGATGTATTATAGAGGCAAAATGTTTGGCTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGCTTCATCAAGCTTCTCAAGAAAGAAGACTCGGTGGTGAGTACGTACCGGGACCATGTTCATTCATTGAGTAAGGGGGTCCCGGCACGTGCTGTAATGAGTGAGCTCTTTGGGAAGGCCACGGGATGCTCCCGTGGTCAAGGTGGATCTATGCATATGTTCTCAAAGGAACATAATGTGATTGGGGGGTTTGCTTTCATTGCTGAAGGAATCCCTATTGCCACTGGGGCAGCATTTTCCAGCAAGTATAGAAGGGAGGTTTTGAAAGAGGCAGATTGTGATCACGTGACATTGGCATTTTTTGGAGATGGAACATGTAACAATGGGCAGTTCTATGAATGCCTAAACATGGCAGCTTTATGGAAATTACCTATTGTGTTTGTGGTGGAAAATAATCTGTGGGCTATTGGGATGTCACATCTCAGGTCAACTTCAGATCCTCAAATATGGAAGAAAGGGCCGGCATTTGGAATGCCGGGGGTTCATGTTGATGGGATGGACGTTTTGAAGGTCAGGGAGGTGGCAAAGGAAGCTATTGAAAGAGCCAGACGAGGAGAGGGACCAACTTTAGTAGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCCGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGCACATTATGCTAATAGGGATCCCATCTCTGCGTTGAAGAAATACATGTTTGAGAACAACTTAGCCAGTGAACAAGAGTTGAAGGCCATAGAGAAGAAGATTGATGAGGTTCTTGAGGATGCAGTTGAGTTTGCAGATGAGAGCCCTCTTCCACCACGCAGCCAGCTTCTGGAGAATGTCTTTGCTGATCCCAAAGGTTTTGGAATTGGACCTGATGGCAAGTACAGATGCGAGGACCCAAAATTCACTGAAGGCACTGCTCATGTCTAA 1275 0.4667 MSLSAPKFAHPLPLHHRSNGSPMSFNTSTPFLGSTQKLRFIAPIKLNARSNSTVVSVSDAVKNKNLKSATNLLITKEEGLLLYEDMILGRFFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHSLSKGVPARAVMSELFGKATGCSRGQGGSMHMFSKEHNVIGGFAFIAEGIPIATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRSTSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYANRDPISALKKYMFENNLASEQELKAIEKKIDEVLEDAVEFADESPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAHV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00083 424 NCBIfam pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 77 397 IPR017597 GO:0004739|GO:0006086|GO:0043231
Vimu10g00083 424 Pfam Dehydrogenase E1 component 87 386 IPR001017 GO:0016624
Vimu10g00083 424 FunFam Pyruvate dehydrogenase E1 component subunit alpha 44 405 - -
Vimu10g00083 424 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 52 407 - -
Vimu10g00083 424 Coils Coil 355 382 - -
Vimu10g00083 424 Gene3D - 45 406 - -
Vimu10g00083 424 CDD TPP_E1_PDC_ADC_BCADC 82 380 - -
Vimu10g00083 424 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 399 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00083 Vimu-Chr10 471191 473587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00083 7 424 Acyl Lipid Metabolism Gene Families AT1G01090 79.335 0.0 689
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00083 K00161 - gmx:100802573 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00083 10 471191 473587 Vimu9g00023 9 221891 224898 PCT