Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0053 ATGTCTCTCTCCGCTCCCAAGTTTGCGCACCCTCTTCCTCTCCATCACAGATCTAATGGCAGCCCCATGTCTTTCAACACGTCCACTCCCTTCCTTGGATCCACTCAGAAGCTTCGTTTCATCGCCCCCATTAAGCTCAATGCTCGCTCTAATTCCACTGTTGTCTCTGTCTCCGATGCTGTCAAGAACAAGAACCTCAAATCAGCTACAAATCTGCTTATTACGAAAGAGGAGGGCTTGTTGCTCTACGAAGACATGATATTAGGCAGGTTCTTTGAAGACATGTGTGCCCAGATGTATTATAGAGGCAAAATGTTTGGCTTTGTTCACTTGTACAATGGCCAAGAAGCTGTGTCAACTGGCTTCATCAAGCTTCTCAAGAAAGAAGACTCGGTCGTGAGTACGTACCGGGACCATGTTCATTCATTGAGTAAGGGGGTCCCGGCACGTGCTGTAATGAGTGAGCTCTTTGGGAAGGCCACGGGATGCTCCCGTGGTCAAGGTGGATCTATGCATATGTTCTCAAAGGAACATAATGTGATTGGGGGGTTTGCTTTCATTGCAGAAGGAATCCCTATTGCCACTGGGGCAGCATTTTCCAGCAAGTATAGAAGGGAGGTTTTGAAAGAGGCAGATTGTGATCACGTGACATTGGCATTTTTTGGAGATGGGACATGTAACAATGGACAGTTCTACGAATGCCTAAACATGGCAGCTTTATGGAAATTGCCTATTGTGTTTGTGGTGGAAAATAATCTGTGGGCTATTGGGATGTCACATCTCAGGTCAACTTCAGATCCTCAAATATGGAAGAAAGGGCCGGCATTTGGGATGCCGGGGGTTCATGTTGATGGGATGGACGTTTTGAAGGTGAGGGAGGTGGCAAAGGAAGCTATTGAAAGAGCCAGACGAGGAGAGGGACCAACTTTAGTAGAATGTGAGACCTATAGATTTAGAGGACATTCATTGGCCGATCCTGATGAGCTTCGTGACCCTGCTGAGAAGGCACACTATGCTGGTAGGGATCCCATCTCTGCGTTGAAGAAATACATGTTTGAGAACAAATTAGCCAGTGAACAAGAGCTGAAGGCCATAGAGAAGAAGATTGATGAGGTTCTTGAGGACGCAGTTGAGTTTGCAGATGAGAGCCCTCTTCCACCACGCAGCCAGCTTCTGGAGAATGTATTTGCTGATCCCAAAGGTTTTGGAATTGGACCTGATGGCAAGTACAGATGCGAGGACCCAAAATTCACTGAAGGCACTGCTCATGTCTAA 1275 0.4698 MSLSAPKFAHPLPLHHRSNGSPMSFNTSTPFLGSTQKLRFIAPIKLNARSNSTVVSVSDAVKNKNLKSATNLLITKEEGLLLYEDMILGRFFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKEDSVVSTYRDHVHSLSKGVPARAVMSELFGKATGCSRGQGGSMHMFSKEHNVIGGFAFIAEGIPIATGAAFSSKYRREVLKEADCDHVTLAFFGDGTCNNGQFYECLNMAALWKLPIVFVVENNLWAIGMSHLRSTSDPQIWKKGPAFGMPGVHVDGMDVLKVREVAKEAIERARRGEGPTLVECETYRFRGHSLADPDELRDPAEKAHYAGRDPISALKKYMFENKLASEQELKAIEKKIDEVLEDAVEFADESPLPPRSQLLENVFADPKGFGIGPDGKYRCEDPKFTEGTAHV* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0053 424 TIGRFAM PDH_E1_alph_y: pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit 77 397 IPR017597 GO:0004739|GO:0006086|GO:0043231
Vra5g0053 424 Pfam Dehydrogenase E1 component 87 386 IPR001017 GO:0016624
Vra5g0053 424 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 399 IPR029061 -
Vra5g0053 424 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA 20 424 - -
Vra5g0053 424 Coils Coil 355 382 - -
Vra5g0053 424 CDD TPP_E1_PDC_ADC_BCADC 82 380 - -
Vra5g0053 424 Gene3D - 45 406 - -
Vra5g0053 424 PANTHER PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR 20 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0053 Vra-Chr5 428353 431400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0053 7 424 Acyl Lipid Metabolism Gene Families AT1G01090 79.572 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0053 K00161 - gmx:100802573 784.637