Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0049 ATGCAGAGGGTCTTTGTTCGATCCAAAACCCTAATTTCGGTTTCTTCCAATTGCATCTTCTTCCCTCCATCACTACCCTTTTACTTCCAAAATCAACAAGCTTTCCACAGCAACAGCAATGGGAACACCCCTTTCGGATCACCAACTCGAGTTCAGAAGCTGATAGCTTCGCAATCAGACCCTCTTTTGGCCAAAGAAATCTTCGATGTGGCCTCTCGCCAACCCAACTTCCGCCATACTTACTCAACCTATCTCATTCTCATCCTCAAGTTGGGTCGCTCCAAACACTTCTCTCTCATCGACCATCTCCTCCGCTGCATCAAATCCGATTCTCACCCCATCACCCCCACCCTCTTCACTTACTTGATCAGGGTCTACGCAGAAGCCGATTTGCCCGACAAAGCCCTCAAAACCTTCTACAACATTCTCCACTTCAATTGCAAGCCTTTGCCCAAACACCTTAACCGCATTCTCGAGATCCTCGTTTCCCACCGTAATTACATTCGTCCCGCCTTCCTTCTCTTCAAGGATGCTCACAGGTATGGGGTGGAACCCAACACCAAGTCCTACAACATTCTCATGCGCGCGTTCTGTCTCAATGGGGACATTAGCATTGCCTACTCACTGTTCAACAAAATGTTCAAACGAGATGTTGTGCCGGATATCGAGTCTTACCGGATTTTGATGCAGGCCTTGTGTCGGAAGAGTCAAGTGAATGGTGCTGTTGATCTTTTGGAGGATATGCTCAACAAAGGGTTTGTTCCTGATTCTTTGACTTACACCACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGCTCAGGGAGGCTTACAAGCTTCTCTGTAGGATGAAGGTCAAAGGGTGCAATCCTGATATTGTTCATTATAATACTGTTATACTAGGGTTCTGTAGAGAAGGGCGCGCTCACGATGCTTGCAAGGTTATTACTGACATGCGGGCCAATGGGTGCTTGCCTAATCTCGTGTCCTATCGTACTTTGGTGAGTGGCTTGTGTGACATGGGAATGCTTGATGAGGCTAGTAAGTATGTCGAGGATATGTTCTGTAAAGGTTTTTCTCCTCATTTCTCTGTTGTTCACGCCTTGGTGAAGGGGTTTTGTAATGTTGGTAGGGTTGAGGATGCTTGTGGAGTTCTTACTAAGTCTCTTGAACATGGGGAAGCTCCGCATGTGGATACTTGGATGATCTTAATTCCTGTAATATGTGAAGTGGATGATGGTGGGAAAATCAATGGTACTTTGGAGGAAGTTCTTAAGATTGAAATAAAAGGGCATACTAGAATTGTCGATGCTGGCATTGGTTTGGAGAACTACTTGATTAGGAAGATACGAGCCAACTCCACCAGAGTATTCTAA 1374 0.4549 MQRVFVRSKTLISVSSNCIFFPPSLPFYFQNQQAFHSNSNGNTPFGSPTRVQKLIASQSDPLLAKEIFDVASRQPNFRHTYSTYLILILKLGRSKHFSLIDHLLRCIKSDSHPITPTLFTYLIRVYAEADLPDKALKTFYNILHFNCKPLPKHLNRILEILVSHRNYIRPAFLLFKDAHRYGVEPNTKSYNILMRAFCLNGDISIAYSLFNKMFKRDVVPDIESYRILMQALCRKSQVNGAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVITDMRANGCLPNLVSYRTLVSGLCDMGMLDEASKYVEDMFCKGFSPHFSVVHALVKGFCNVGRVEDACGVLTKSLEHGEAPHVDTWMILIPVICEVDDGGKINGTLEEVLKIEIKGHTRIVDAGIGLENYLIRKIRANSTRVF* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0049 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vra5g0049 457 PANTHER OS09G0532800 PROTEIN 34 448 - -
Vra5g0049 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Vra5g0049 457 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 34 448 - -
Vra5g0049 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Vra5g0049 457 TIGRFAM PPR: pentatricopeptide repeat domain 294 326 IPR002885 -
Vra5g0049 457 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Vra5g0049 457 TIGRFAM PPR: pentatricopeptide repeat domain 259 292 IPR002885 -
Vra5g0049 457 TIGRFAM PPR: pentatricopeptide repeat domain 224 257 IPR002885 -
Vra5g0049 457 TIGRFAM PPR: pentatricopeptide repeat domain 189 222 IPR002885 -
Vra5g0049 457 Gene3D Tetratricopeptide repeat domain 151 283 IPR011990 GO:0005515
Vra5g0049 457 Pfam PPR repeat 367 392 IPR002885 -
Vra5g0049 457 Pfam PPR repeat 119 144 IPR002885 -
Vra5g0049 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Vra5g0049 457 Pfam PPR repeat family 185 234 IPR002885 -
Vra5g0049 457 Pfam PPR repeat family 290 339 IPR002885 -
Vra5g0049 457 Pfam PPR repeat 251 284 IPR002885 -
Vra5g0049 457 Gene3D Tetratricopeptide repeat domain 353 429 IPR011990 GO:0005515
Vra5g0049 457 Gene3D Tetratricopeptide repeat domain 47 150 IPR011990 GO:0005515
Vra5g0049 457 Gene3D Tetratricopeptide repeat domain 284 352 IPR011990 GO:0005515
Vra5g0049 457 SUPERFAMILY TPR-like 111 283 IPR011990 GO:0005515
Vra5g0049 457 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 186 220 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0049 Vra-Chr5 408291 410775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0049 116 429 Glycosyltransferase AT1G05670 30.573 2.59e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0049 K20291 - gmx:100778820 805.053