Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00077 ATGCAGAGGGTCTTTGTTCGATCCAAAACCCTAATTTCGGTTACTTCTAATTCCATCTTCTTCCCTCCATCACTACCCTTTTACTTGCAAAATCAACAAGCTTTCCACAGCAACAGCAACGGGAACGGGAACACCCCTTTCGGATCACCAACTCGAGTTCAGAAGCTGATAGCTTCGCAATCAGACCCTCTTTTGGCCAAAGAAATCTTCGATGTGGCCTCTCGCCAACCCAACTTCCGCCATACTTACTCAACCTATCTCATTCTCATCCTCAAGTTGGGTCGCTCCAAACACTTCTCTCTCATCGACCATCTCCTCCGCTGCATTAAATCCGATTCTCACCCCATCACCCCCACCCTCTTCACTTACTTGATCAGAGTCTACGCAGAAGCCGATTTGCCCGACAAAGCCCTCAAAGCTTTCTACGACATTCTCCACTTCAATTGCAAGCCTTTGCCCAAACACCTTAACCGCATTCTCGAGATCCTCGTTTCCCACCGTAATTACATTCGACCCGCCTTCCTTCTCTTCAAGGATGCTCACAGGTATGGGGTGGAACCCAACACCAAGTCCTACAACATTCTCATGCGCGCGTTCTGTCTCAATGGGGATATTAGCATTGCCTACTCACTGTTCAACAAAATGTTCAAACGAGATGTTGTGCCGGATATCGAGTCTTACCGGATTTTGATGCAGGCCTTGTGTCGGAAGAGTCAAGTGAATGGTGCTGTTGATCTTTTGGAGGATATGCTCAACAAAGGGTTTGTTCCGGATTCTTTGACTTACACCACTTTGTTGAATAGTTTGTGTAGGAAGAAGAAGCTCAGGGAGGCTTACAAGCTTCTCTGTAGGATGAAGGTCAAAGGGTGCAATCCTGATATTGTTCATTATAATACTGTTATACTAGGGTTCTGTAGAGAAGGGCGCGCTCACGATGCTTGCAAGGTTATTACTGACATGCGGGCCAATGGGTGCTTGCCTAATCTTGTGTCCTATCGTACTTTGGTGAGTGGCTTGTGTGACATGGGAATGCTTGATGAGGCTAGTAAGTATGTTGAGGAGATGTTCTGTAAAGGTTTTTCTCCTCATTTCTCTGTTGTTCACGCCTTGGTGAAGGGGTTTTGTAATGTTGGTAGGGGTGAGGATGCTTGTGGAGTTCTTACTAAGTCTCTTGAACATGGGGAAGCTCCGCATGTGGATACTTGGATGATCTTAATTCCTGTAATATGTGAAGTGGATGATGGTGGGAAAATCAATGGTGCTTTGGAGGAAGTTCTTAAGATTGAAATAAAAGGGCACACTAGAATTGTCGATGCTGGCATTGGTTTGGAGAACTACTTAATTAGGAAGATACGAGCCAACTCCAACAGAGCATTCTAA 1380 0.4558 MQRVFVRSKTLISVTSNSIFFPPSLPFYLQNQQAFHSNSNGNGNTPFGSPTRVQKLIASQSDPLLAKEIFDVASRQPNFRHTYSTYLILILKLGRSKHFSLIDHLLRCIKSDSHPITPTLFTYLIRVYAEADLPDKALKAFYDILHFNCKPLPKHLNRILEILVSHRNYIRPAFLLFKDAHRYGVEPNTKSYNILMRAFCLNGDISIAYSLFNKMFKRDVVPDIESYRILMQALCRKSQVNGAVDLLEDMLNKGFVPDSLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVITDMRANGCLPNLVSYRTLVSGLCDMGMLDEASKYVEEMFCKGFSPHFSVVHALVKGFCNVGRGEDACGVLTKSLEHGEAPHVDTWMILIPVICEVDDGGKINGALEEVLKIEIKGHTRIVDAGIGLENYLIRKIRANSNRAF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00077 459 Gene3D Tetratricopeptide repeat domain 148 285 IPR011990 GO:0005515
Vimu10g00077 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Vimu10g00077 459 Pfam PPR repeat family 292 341 IPR002885 -
Vimu10g00077 459 Pfam PPR repeat family 227 271 IPR002885 -
Vimu10g00077 459 Pfam PPR repeat 184 215 IPR002885 -
Vimu10g00077 459 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 206 309 - -
Vimu10g00077 459 NCBIfam pentatricopeptide repeat 191 224 IPR002885 -
Vimu10g00077 459 NCBIfam pentatricopeptide repeat 261 294 IPR002885 -
Vimu10g00077 459 NCBIfam pentatricopeptide repeat 226 259 IPR002885 -
Vimu10g00077 459 NCBIfam pentatricopeptide repeat 296 328 IPR002885 -
Vimu10g00077 459 NCBIfam pentatricopeptide repeat 330 362 IPR002885 -
Vimu10g00077 459 Pfam PPR repeat 121 149 IPR002885 -
Vimu10g00077 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 222 IPR002885 -
Vimu10g00077 459 Gene3D Tetratricopeptide repeat domain 286 357 IPR011990 GO:0005515
Vimu10g00077 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Vimu10g00077 459 SUPERFAMILY TPR-like 113 285 IPR011990 GO:0005515
Vimu10g00077 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 223 257 IPR002885 -
Vimu10g00077 459 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00077 Vimu-Chr10 456504 457883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00077 118 431 Glycosyltransferase AT1G05670 30.892 2.57e-42 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00077 K20291 - gmx:100778820 810.831