Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi4g0814 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0815 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0817 . Acco10g1435 . Accr4g00055 Adu07g01096 . . Aed3g1982 . . . . . Aip07g01179 . Alju08g0068 . . . . . . Bach3g01044 . . Bisa09g0485 . . . . . Cca05g01391 . Dere04g2033 . Dod08g0893 . Enph1g0941 . Glsi08g0734 . . . . . . . . . . . . . . . . . . . . . . Lasa2g01528 Lasa5g01612 . . . . . . . . . . . . Mepo7g02021 Mepo3g05300 . . . Mibi05g0038 . . . . Phco3g00512 Phco11g01559 . Prci15g0088 . . Pste8g01553 Pste7g01893 . Pte8g00561 . Pte8g00561 Pumo9g02540 . Pvu8g2508 Pvu6g0880 Rops9g01097 Rops11g03381 . . . Spst6g00263 . Ssu6g2811 . Sto9g2340 . . . . . . Vian7g01747 Vian6g00784 Vifa1g01772 Vifa2g01446 Vimu1g01196 Vimu2g01937 Viun8g02063 Viun6g01390 . . . Vra6g0785
Vvi4g0818 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0819 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0820 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0821 Acco05g1329 . Accr3g01663 . . . . Aed3g1993 Aev03g0696 . Ahy13g3555 . Aip03g04004 . Alju07g1263 . Amo13g4521 . . . . . Bach3g01053 . Bisa05g1413 . Bva13g01381 . . . . Cca05g01400 Dere05g1123 . Dod04g0185 . Enph7g0264 . Glsi10g1784 . . . . . . . . . . . . . . . . . . . . . . . Lasa2g01513 . Lele25g1351 . Lele27g0734 . . . . . . . . . Mepo7g02045 . Mesa17g03395 . Mibi08g1092 . . . . . Phco3g00523 . Prci2g2148 . . . Pste8g01543 . Pte16g00749 Pte8g00588 . . Pumo9g02520 . Pvu8g2497 . Rops9g01067 . Seca8g01231 . . . . Ssu6g2823 Sto5g1731 Sto9g2352 . . Trre9g04067 . . . Vian7g01736 . Vifa1g01734 . Vimu1g01179 . Viun8g02081 . . . . Vra6g0774
Vvi4g0822 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi4g0823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi4g0814 Chr4 10272951 10274688 -
Vvi Vvi4g0815 Chr4 10284415 10284903 -
Vvi Vvi4g0816 Chr4 10331278 10331778 +
Vvi Vvi4g0817 Chr4 10403355 10404569 +
Acco Acco10g1435 Chr10 28125600 28132943 +
Accr Accr4g00055 Chr4 718217 725679 +
Adu Adu07g01096 Chr07 15655354 15661311 +
Aed Aed3g1982 Chr3 23942227 23952918 -
Aip Aip07g01179 Chr07 17210838 17217248 +
Alju Alju08g0068 Chr08 545900 550101 +
Bach Bach3g01044 Chr3 20867951 20873816 -
Bisa Bisa09g0485 Chr09 7080126 7088723 -
Cca Cca05g01391 Chr05 32212978 32226898 -
Dere Dere04g2033 Chr04 23298229 23305947 -
Dod Dod08g0893 Chr08 10908242 10911819 +
Enph Enph1g0941 Chr1 35702268 35709460 -
Glsi Glsi08g0734 Chr08 5677581 5678012 -
Lasa Lasa2g01528 Chr2 463169341 463176505 +
Lasa Lasa5g01612 Chr5 387591590 387597653 -
Mepo Mepo7g02021 Chr7 30438225 30448208 -
Mepo Mepo3g05300 Chr3 66371802 66379618 -
Mibi Mibi05g0038 Chr05 730149 732436 -
Phco Phco3g00512 Chr3 3965325 3975534 -
Phco Phco11g01559 Chr11 11902527 11909050 +
Prci Prci15g0088 Chr15 613666 617424 -
Pste Pste8g01553 Chr8 8829234 8840515 +
Pste Pste7g01893 Chr7 17308896 17316884 -
Pte Pte8g00561 Chr8 27280558 27287929 -
Pte Pte8g00561 Chr8 27280558 27287929 -
Pumo Pumo9g02540 Chr9 60239060 60249527 +
Pvu Pvu8g2508 Chr8 55661856 55672857 +
Pvu Pvu6g0880 Chr6 20268682 20276245 -
Rops Rops9g01097 Chr9 17989156 17998393 +
Rops Rops11g03381 Chr11 64934115 64942489 -
Spst Spst6g00263 Chr6 2630982 2638303 -
Ssu Ssu6g2811 Chr6 65295871 65305938 -
Sto Sto9g2340 Chr9 26633758 26640550 -
Vian Vian7g01747 Chr7 27372221 27375723 +
Vian Vian6g00784 Chr6 24835798 24841853 -
Vifa Vifa1g01772 Chr1 288255705 288263219 +
Vifa Vifa2g01446 Chr2 391414269 391420536 -
Vimu Vimu1g01196 Chr1 9312385 9314887 +
Vimu Vimu2g01937 Chr2 14104877 14115551 +
Viun Viun8g02063 Chr8 31137595 31147928 -
Viun Viun6g01390 Chr6 22541045 22547913 -
Vra Vra6g0785 Chr6 7661941 7673634 +
Vvi Vvi4g0818 Chr4 10406062 10406889 +
Vvi Vvi4g0819 Chr4 10435489 10447838 +
Vvi Vvi4g0820 Chr4 10470253 10475343 -
Vvi Vvi4g0821 Chr4 10519232 10523197 +
Acco Acco05g1329 Chr05 28099634 28106227 +
Accr Accr3g01663 Chr3 20576074 20582247 -
Aed Aed3g1993 Chr3 24022129 24027643 +
Aev Aev03g0696 Chr03 5224876 5229941 -
Ahy Ahy13g3555 Chr13 133793040 133797453 +
Aip Aip03g04004 Chr03 123381932 123386217 +
Alju Alju07g1263 Chr07 37202641 37208978 +
Amo Amo13g4521 Chr13 141870260 141874650 +
Bach Bach3g01053 Chr3 20948301 20952581 +
Bisa Bisa05g1413 Chr05 24981892 24986510 +
Bva Bva13g01381 Chr13 7238649 7243681 -
Cca Cca05g01400 Chr05 32391529 32396528 +
Dere Dere05g1123 Chr05 18107272 18112368 -
Dod Dod04g0185 Chr04 2256347 2267198 -
Enph Enph7g0264 Chr7 8635046 8640471 +
Glsi Glsi10g1784 Chr10 12321513 12326543 -
Lasa Lasa2g01513 Chr2 462341642 462346256 -
Lele Lele25g1351 Chr25 9324539 9330522 -
Lele Lele27g0734 Chr27 15466983 15472952 +
Mepo Mepo7g02045 Chr7 30780812 30786342 +
Mesa Mesa17g03395 Chr17 59876291 59881908 +
Mibi Mibi08g1092 Chr08 25624213 25630372 +
Phco Phco3g00523 Chr3 4054773 4059689 +
Prci Prci2g2148 Chr2 16340139 16343574 -
Pste Pste8g01543 Chr8 8706187 8711124 -
Pte Pte16g00749 Chr16 24813410 24817441 +
Pte Pte8g00588 Chr8 28201499 28206190 +
Pumo Pumo9g02520 Chr9 59968096 59973180 -
Pvu Pvu8g2497 Chr8 55557595 55562802 -
Rops Rops9g01067 Chr9 17453793 17459326 +
Seca Seca8g01231 Chr8 19013578 19018734 -
Ssu Ssu6g2823 Chr6 65487033 65491911 +
Sto Sto5g1731 Chr5 12469914 12470444 -
Sto Sto9g2352 Chr9 26751900 26756628 +
Trre Trre9g04067 Chr9 48644692 48651141 +
Vian Vian7g01736 Chr7 27209454 27211203 +
Vifa Vifa1g01734 Chr1 283143287 283147853 -
Vimu Vimu1g01179 Chr1 9118670 9123363 +
Viun Viun8g02081 Chr8 31250599 31255164 +
Vra Vra6g0774 Chr6 7546108 7551335 +
Vvi Vvi4g0822 Chr4 10548897 10552163 -
Vvi Vvi4g0823 Chr4 10568996 10571153 +