Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra6g0774 ATGGCTTCTGCACCAGCCTTAAAACGCACAGATTCTGTCATAGATAATATGCCTGATGCATTGAGGCAGAGTCGGTACCACATGAAGAGATGTTTTGCCAAGTACCTCGAAAAGGGTAGGAGGATTATGAAACATCACCATTTGATGGAAGAAATGGAACTAGTAATAGATGACAAAAGTGAAAGAAATCAAGTCTTGGAGGGTATTCTTGGCTTCATATTGAGCTCCACGCAGGAAGCTGTTGCTGATCCACCGTATGTTGCCTTTGCAATAAGGCCTAATCCAGGAGTTTGGGAATTTGTAAAAGTGAGCTCTGAGGACCTTTCTGTTGAGGCTATCACCCCCACTGACTTCCTCAAATTCAAGGAAAGGGTAACTGATGAAAAATGGGCAACCGATGAGAATTCATTTGAAGCAGACTTTGGAGCATTCGATTTCCAAATTCCTCAACTAACCCTCTCATCTTCAATTGGAAATGGACTCCAATTTACTTCCAAGTTTTTGACTTCCAAGATAACTGGGAAATTGGAGAAAACACAGGCTATAGTGGACTACTTGTTAACACTAAATCATCAGGGAGAAAAGTTGATGATAAATGAGAGCCTGAACTCTGCTGCAAAGCTACAGATGGCACTGGTAGTGGCTGATGCATTCCTCTCAGCACTTCCCAAAGACACTGCATATCAGAATTTTGAGCTAAGGTTCAAGGAGTGGGGGTTCGAGAGAGGATGGGGAGATACTGCAGAAAGAGTGAAGGAGACAATGAGAACTCTATCAGAAGTACTTCAAGCACCTGACCCAGTCAACCTGGAGAAATTTTTAAGTAGATTACCAATAATATTCAATGTAGCCATCTTCTCAGTTCATGGTTATTTTGGACAAGCAGATGTTCTTGGCTTGCCGGACACAGGTGGCCAGATAGTTTACATATTGGACCAAGTCAAGTCTCTGGAAGCAGAATTGCTTCTGAGAATCAAGCAACAAGGGCTAAATGTGAAGCCTCAAATTCTTGTGGTAACAAGGCTCATACCTGATGCTCGGGGAACCAAGTGTCACCAGGAGTTGGAACCAATAAATGATACTAAACACTCCCACATTTTACGTGTGCCTTTTCAGACAGATAAAGGAATACTGCATCAGTGGGTTTCACGCTTTGATATTTACCCCTATCTTGAGAGGTTTACTCAGGATGCAACAACCAAGATTCTTGAGTTCATGGAAGGGAAACCAGATCTAGTTATTGGAAATTACACAGATGGAAATTTGGTAGCATCACTAATGGCTAGAAAACTTGGGATAACTCAGGGAATTATAGCACATGCTTTAGAGAAGACCAAGTATGAAGACTCAGATGTCAAGTGGAAAGAATTGGATCCCAAATATCACTTCTCATGTCAATTCATGGCTGATACAGTGGCAATGAATGCAACTGATTTCATCATAACCAGCACATACCAGGAAATTGCTGGAAGCAAAGATAGACCTGGACAATATGAAAGCCATGCCGCATTCACACTCCCAGGGCTGTGTAGAGTTGTTTCAGGGATAAACGTGTTTGATCCTAAGTTCAACATAGCCGCGCCAGGAGCAGACCAATCTGTCTATTTCCCTTACACAGAGAAAGAAAAAAGGCTCACTCAATTTCAGCCAGCCATTGAGGATCTTCTTTTTAGTAAAGTGGATAACAATGAGCATATTGGATACCTGGCAGATAGGAGGAAGCCAATTATCTTCTCAATGGCTAGGCTTGATGTTGTAAAGAACTTAAGCGGGTTAGTTGAGTGGTTTGGCAAGAACAAGAGATTGAGAAATTTGGTGAACCTTGTCATAGTAGGGGGCTTCTTTGACCCTTCAAAATCAAAAGATAGGGAGGAAATGGCAGAGATAAAAAAGATGCATGACTTAATTGATAAGTACCAACTGAAGGGTCAGTTTAGATGGATTGCTGCACAGACTAATAGGTACCGCAATGGAGAGCTCTACCGTTGCATTGCTGACACAAGAGGAGCATTTGTGCAGCCTGCTTTGTATGAAGCATTTGGATTAACTGTCATTGAAGCAATGAACTGTGGATTGCCCACTTTTGCTACCAACCAAGGAGGTCCAGCAGAAATTATTGTTGATGGGGTCTCTGGCTTCCACATTGATCCCCTCAATGGCGATGAATCAAGCAAAAAAATTTCTGATTTCTTTGAAAAATGCAAAATGGACCCCTCACAATGGAATGTGATTTCTGCAGCCGGATTGCAGCGCATAAATGAATGCTATACCTGGAAAATTTATGCAAACAAGATGGTAAACATGGGGAACATTTACACCTTCTGGAGACAAGTGAATAAGGAGCAAAAAGAGGCAAAGCAGAGATACATTCAGATGTTCTATAATCTTATATTCAAGAATTTGGTTAAGACTGTACCTGTTCCAATTGATGAACCTCAACAAGCAGTGACCAAGCAGCCGAGTCTTAAATCTCAGAGCACAAGACGCTCACAGTCCAGACTACAAAGGTTATTCGGAAATTAA 2523 0.4174 MASAPALKRTDSVIDNMPDALRQSRYHMKRCFAKYLEKGRRIMKHHHLMEEMELVIDDKSERNQVLEGILGFILSSTQEAVADPPYVAFAIRPNPGVWEFVKVSSEDLSVEAITPTDFLKFKERVTDEKWATDENSFEADFGAFDFQIPQLTLSSSIGNGLQFTSKFLTSKITGKLEKTQAIVDYLLTLNHQGEKLMINESLNSAAKLQMALVVADAFLSALPKDTAYQNFELRFKEWGFERGWGDTAERVKETMRTLSEVLQAPDPVNLEKFLSRLPIIFNVAIFSVHGYFGQADVLGLPDTGGQIVYILDQVKSLEAELLLRIKQQGLNVKPQILVVTRLIPDARGTKCHQELEPINDTKHSHILRVPFQTDKGILHQWVSRFDIYPYLERFTQDATTKILEFMEGKPDLVIGNYTDGNLVASLMARKLGITQGIIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTVAMNATDFIITSTYQEIAGSKDRPGQYESHAAFTLPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKEKRLTQFQPAIEDLLFSKVDNNEHIGYLADRRKPIIFSMARLDVVKNLSGLVEWFGKNKRLRNLVNLVIVGGFFDPSKSKDREEMAEIKKMHDLIDKYQLKGQFRWIAAQTNRYRNGELYRCIADTRGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPLNGDESSKKISDFFEKCKMDPSQWNVISAAGLQRINECYTWKIYANKMVNMGNIYTFWRQVNKEQKEAKQRYIQMFYNLIFKNLVKTVPVPIDEPQQAVTKQPSLKSQSTRRSQSRLQRLFGN* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra6g0774 840 Pfam Glycosyl transferases group 1 567 733 IPR001296 GO:0016757
Vra6g0774 840 Pfam Sucrose synthase 9 557 IPR000368 GO:0005985|GO:0016157
Vra6g0774 840 Gene3D Glycogen Phosphorylase B; 284 801 - -
Vra6g0774 840 MobiDBLite consensus disorder prediction 814 840 - -
Vra6g0774 840 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 300 767 - -
Vra6g0774 840 Gene3D - 11 149 - -
Vra6g0774 840 PANTHER SUCROSE SYNTHASE 1 823 - -
Vra6g0774 840 Gene3D Glycogen Phosphorylase B; 531 758 - -
Vra6g0774 840 PANTHER - 1 823 IPR012820 GO:0005985|GO:0016157
Vra6g0774 840 TIGRFAM sucr_synth: sucrose synthase 26 806 IPR012820 GO:0005985|GO:0016157
Vra6g0774 840 Gene3D - 150 279 - -
Vra6g0774 840 MobiDBLite consensus disorder prediction 813 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra6g0774 Vra-Chr6 7546108 7551335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra6g0774 5 811 Glycosyltransferase AT4G02280 56.010 0.0 979
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra6g0774 K00695 - gmx:100808482 1606.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0774 6 7546108 7551335 Vra6g0774 6 7546108 7551335 ECH