Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01179 ATGGCTTCTGCACCAGCCTTAAAACGCACAGACTCTGTCATAGATAATATGCCTGATGCATTGAGGCAGAGTCGGTACCACATGAAGAGGTGTTTTGCCAAGTACCTCGAAAAGGGTAGGAGGATTATGAAACATCACCATTTGATGGAAGAAATGGAACTAGTAATAGATGACAAAAGTGAAAGAAATCAAGTTTTGGAGGGTATTCTTGGCTTCATATTGAGCTCCACGCAGGAAGCTGTTGCTGATCCACCGTATGTTGCCTTTGCAATAAGGCCTAATCCAGGAGTTTGGGAATTTGTAAAAGTGAGCTCTGAGGACCTTTCTGTTGAGGCTATCACCCCCACTGAATTCCTCAAATTCAAGGAAAGGGTCACTGATGAAAAATGGGCAACCGATGAGAATTCATTTGAAGCAGACTTTGGAGCATTCGATTTCCAAGTTCCTCAACTAACCCTCTCATCTTCAATTGGAAATGGACTCCAATTTACTTCTAAGTTTTTGACTTCCAAGATAACTGGGAAATTGGAGAAAACACAGGCTATAGTGGACTACTTGTTAACACTAAATCATCAGGGAGAAAAGTTGATGATAAATGAGAGCCTGAACTCTGCTGCAAAGCTACAGATGGCACTGGTAGTGGCTGATGCATTCCTCTCAGCACTTCCCAAAGACACTGCATATCAGAATTTTGAGCTAAGGTTCAAGGAGTGGGGGTTCGAGAGAGGATGGGGAGATACTGCAGAAAGAGTGAAGGAGACAATGAGAACTCTATCAGAAGTACTCCAAGCACCTGACCCAGTCAACCTGGAGAAATTTTTAAGTAGATTACCAATAATATTCAATGTAGCCATCTTCTCAGTTCATGGTTATTTTGGACAAGCAGATGTTCTTGGCTTGCCGGATACAGGTGGCCAGATAGTTTACATATTGGACCAAGTCAAGTCTCTGGAAGCAGAATTGCTTCTGAGAATCAAGCAACAAGGGCTAAATGTGAAACCTCAAATTCTTGTGATAACAAGGCTCATACCTGATGCTCGGGGAACCAAGTGTCACCAGGAGTTGGAACCAATAAATGATACTAAACACTCCCACATTTTACGTGTGCCTTTTCAGACAGATAAAGGAATACTGCATCAGTGGGATGCAACAACCAAGATTCTTGAGTTCATGGAAGGGAAACCAGATCTTGTTATTGGAAATTACACAGATGGAAATTTGGTAGCATCACTAATGGCTAGAAAACTTGGGATAACTCAGGGAATTATAGCACATGCTTTAGAGAAGACCAAGTATGAAGACTCAGATGTCAAGTGGAAAGAGTTGGATCCCAAATATCACTTCTCATGTCAATTCATGGCTGATACAGTGGCAATGAATGCAACTGATTTCATCATAACCAGCACATACCAGGAAATTGCTGGAAGCAAAGATAGACCTGGACAATATGAAAGCCATGCCGCATTCACACTCCCAGGGCTGTGTAGAGTTGTTTCAGGGATAAACGTGTTTGATCCTAAGTTCAACATAGCCGCGCCAGGAGCAGACCAATCTGTCTATTTCCCTTACACAGAAAAAGAAAAAAGGCTAACTCAATTTCAGCCAGCCATTGAGGATCTTCTTTTTAGTAAAGTGGATAACAATGAGCATATTGGATACCTGGCAGATAGGAGGAAGCCAATTATCTTCTCAATGGCTAGGCTTGATGTCGTAAAGAACTTAAGCGGGTTAGTTGAATGGTTTGGCAAGAACAAGAGATTGAGAAATTTGGTGAACCTTGTCATAGTAGGGGGCTTCTTTGACCCTTCAAAATCAAAAGATAGGGAGGAAATGGCAGAAATAAAAAAGATGCATGACTTAATTGATAAGTACCAACTGAAGGGTCAGTTTAGATGGATTGCTGCACAGACTAATAGGTACCGCAACGGAGAGCTCTACCGTTGCATTGCTGACACAAGAGGAGCATTTGTGCAGCCTGCTTTGTATGAAGCATTTGGATTAACTGTCATTGAAGCAATGAACTGTGGATTGCCCACTTTTGCTACCAACCAAGGAGGTCCAGCAGAAATTATTGTTGATGGGGTCTCTGGCTTCCACATTGATCCCCTCAATGGCGATGAATCAAGCAAAAAAATTTCTGATTTCTTTGAAAAATGCAAAATGGACCCCTCACAATGGAATGTGATTTCTGCAGCCGGATTGCAGCGCATAAATGAATGCTATACCTGGAAAATTTATGCAAACAAGATGGTAAACATGGGGAACATTTACACCTTTTGGAGACAAGTGAATAAGGAGCAAAAAGAGGCAAAGCAGAGATACATTCAGATGTTCTATAATCTTATATTCAAGAATTTGGTTAAGACTGTACCTGCTCCAAGTGATGAACCTCAACAAGCAGTGACCAAGCAGCCGAGTCTTAAATCTCAGAGCACAAGACGTTCACAGTCCAGACTACAAAGGTTAGGTTCATTGCATAGAACTGAATTAGGTCATGATTATTAG 2505 0.4164 MASAPALKRTDSVIDNMPDALRQSRYHMKRCFAKYLEKGRRIMKHHHLMEEMELVIDDKSERNQVLEGILGFILSSTQEAVADPPYVAFAIRPNPGVWEFVKVSSEDLSVEAITPTEFLKFKERVTDEKWATDENSFEADFGAFDFQVPQLTLSSSIGNGLQFTSKFLTSKITGKLEKTQAIVDYLLTLNHQGEKLMINESLNSAAKLQMALVVADAFLSALPKDTAYQNFELRFKEWGFERGWGDTAERVKETMRTLSEVLQAPDPVNLEKFLSRLPIIFNVAIFSVHGYFGQADVLGLPDTGGQIVYILDQVKSLEAELLLRIKQQGLNVKPQILVITRLIPDARGTKCHQELEPINDTKHSHILRVPFQTDKGILHQWDATTKILEFMEGKPDLVIGNYTDGNLVASLMARKLGITQGIIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTVAMNATDFIITSTYQEIAGSKDRPGQYESHAAFTLPGLCRVVSGINVFDPKFNIAAPGADQSVYFPYTEKEKRLTQFQPAIEDLLFSKVDNNEHIGYLADRRKPIIFSMARLDVVKNLSGLVEWFGKNKRLRNLVNLVIVGGFFDPSKSKDREEMAEIKKMHDLIDKYQLKGQFRWIAAQTNRYRNGELYRCIADTRGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPLNGDESSKKISDFFEKCKMDPSQWNVISAAGLQRINECYTWKIYANKMVNMGNIYTFWRQVNKEQKEAKQRYIQMFYNLIFKNLVKTVPAPSDEPQQAVTKQPSLKSQSTRRSQSRLQRLGSLHRTELGHDY 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01179 834 Pfam Glycosyl transferases group 1 552 718 IPR001296 GO:0016757
Vimu1g01179 834 FunFam Sucrose synthase 12 149 - -
Vimu1g01179 834 Gene3D - 150 279 - -
Vimu1g01179 834 NCBIfam sucrose synthase 26 791 IPR012820 GO:0005985|GO:0016157
Vimu1g01179 834 MobiDBLite consensus disorder prediction 795 822 - -
Vimu1g01179 834 PANTHER - 7 795 IPR012820 GO:0005985|GO:0016157
Vimu1g01179 834 Pfam Sucrose synthase 9 542 IPR000368 GO:0005985|GO:0016157
Vimu1g01179 834 Gene3D Glycogen Phosphorylase B; 284 786 - -
Vimu1g01179 834 Gene3D Glycogen Phosphorylase B; 516 743 - -
Vimu1g01179 834 Gene3D - 11 149 - -
Vimu1g01179 834 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 300 752 - -
Vimu1g01179 834 MobiDBLite consensus disorder prediction 793 822 - -
Vimu1g01179 834 FunFam Sucrose synthase 516 743 - -
Vimu1g01179 834 FunFam Sucrose synthase 150 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01179 Vimu-Chr1 9118670 9123363 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01179 5 796 Glycosyltransferase AT4G02280 55.019 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01179 K00695 - gmx:100808482 1557.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01179 1 9118670 9123363 Vimu1g01179 1 9118670 9123363 ECH