Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g01231 ATGGCTTCTGCACCAGCCTTAAGGCGCACAGAATCTATAGCAGATAATATGCCAGATGCATTGAGGCAGAGCCGTTACCATATGAAGAGGTGCTTTGCTAAGTACCTTGAGAAAGGAAGAAGGATTATGAAACTTCAACATTTGATGGAAGAAATGGAAAGAGTTATAGATGACAAAATTGAAAGAAATAGAGTTTTGGAGGGGATTCTTGGCTTCATAGTGACCTCAACACAGGAAGCTGTTGTAGATCCACCATATGTTGCCTTTGGAATAAGGCCTAATCCAGGAGTTTGGGAATATGTACGTGTCAACTCTGAGGACCTCTCTGTTGAGGCTATCACCCCCACAGAGTACCTCAAATTCAAGGAAAGGGTATATGACGAAAAATGGGCAACCGATGAAAACGCATTTGAAGCAGACTTTGGAGCATTTGATTTCCAGATTCCTCAATTAACACTGTCTTCTTCAATTGGAAATGGACTCCAATTTGTTTCAAAGTTCTTAACTTCAAAGTTATCTGGGAAATTGGCCAAAACACAGGCTATAGTAGACTACTTGTTAACTCTAAATCATCATGAAGAGAGCCTGATGATAAATGAGACCTTGAACTCTGCTGCAAAGCTTCAAATGGCACTAGTAGTGGCTGATGTATTCCTCTCAGCACTTCCCAAAGACACTGCATATCATAATTTTGAGCTAAGGTTAAAGGAGTGGGGGTTTGAGAGAGGATGGGGTGATACTGCAGGAAGAGTGAAAGAGACAATGGGAACTCTATCAGAAGTACTCCAAGCACCAGACCCAGTGAACATGGAGAAATTTTTCAGCAGAATTCCCACAATATTCAAAGTAGTGATCTTTTCTGTTCATGGTTATTTTGGCCAAGCAGATGTCCTTGGCTTGCCAGACACTGGTGGCCAGGTAGTTTACATATTGGACCAAGTTAAAGCACTAGAAGAAGAGTTGCTTCTCAGAATTAAGCAACAAGGACTAAATGTGAAACCTCAAATTCTTGTGGTAACACGGCTCATTCCTGATGCTCGAGGAACCAAGTGCCACCAAGAGTTTGAACCAATCAATAACACAAAGCATTCCCACATTCTACGTGTGCCTTTTCAGACAGAGAAAGGAATCTTGCGCCAATGGGTTTCTCGCTTTGACATTTATCCTTATCTTGAGAGGTTTACTCATGATGCAACAACCAAGATTCTGGACCTTATGGAAGGTAAACCAGATCTTGTTATTGGAAATTACACTGATGGAAATTTGGTAGCATCTTTAATGGCCAGAAAACTTGGGATAACTCAGGGAACTATAGCACATGCTTTAGAGAAGACCAAGTATGAAGACTCAGATGTCAAGTGGAAAGAGTTGGATCCCAAGTATCATTTCTCATGTCAATTCATGGCTGATACAGTTGCAATGAATGCATCTGATTTCATCATAACCAGCACATATCAGGAAATTGCTGGAAGCAAAGATAGACCTGGACAATATGAAAGCCATGCTGCATTTACACTCCCAGGGCTGTGTAGAGTTGTTTCAGGAATAAATGTGTTTGATCCCAAGTTCAACATAGTTGCACCTGGAGCTGACCAATCTGTGTATTTCCCTTACACAGAGAAAGACAAAAGACTCTCTCAATTTCACCCTGCCATTGAAGACCTTCTCTTTAGTAAAGTGGATAATACTGAACATATTGGATATCTAGCAGAGAGGAGGAAACCAATAATCTTCTCAATGGCAAGGCTTGATGTTGTGAAGAACTTAACAGGATTAGTTGAATGGTATGCCAAGAACAAGAGACTGAGAAATTTGGTGAACCTTGTCATAGTTGGGGCTTTCTTTGACCCTGCAAAATCAAAAGATAGGGAGGAAATAGCAGAAATAAAAAAGATGCATGATTTAATTGAAAGGTACCAACTTAGGGGTCAATTCAGATGGATTGCTGCACAGACTAATAGATACCGCAATGGAGAGCTCTACCGTTGCATTGCTGACACAAAGGGAGCATTTGTGCAACCTGCTTTGTATGAAGCATTTGGATTAACTGTCATTGAAGCAATGAACTGTGGCTTACCAACTTTTGCTACCAACCAAGGAGGTCCAGCAGAAATCATTGTTGATGGGGTCTCTGGCTTCCACATTAACCCCCTCAATGGAGATGAATCAAGCAACAAAATTGCTGATTTCTTTGAAAAATGCAAAGTGGATCCATCACACTGGAATGTGATTTCTGCAGCTGGATTGCAGCGCATAAATGAATGCTATACCTGGAAGATCTATGCAAACAAGTTGGTAAATATGGGAAACATTTATACCTTTTGGAGGATAGTGAATAAGGAACAAAAAGAGGCAAAGCAGAGATACATCCATATGTTCTATAATCTCATATTCAAGAATTTGGTGAAGACTGTACCTATTCCAAGTGATGAACACCCACAACCAGTGGGCAAGCAGGCAAGTAATAAACAACTGGGAAGCTCAGGCACCAGACGTTCACAATCCACATTGAGAAGGTTACTTGGAGTTTAA 2532 0.4084 MASAPALRRTESIADNMPDALRQSRYHMKRCFAKYLEKGRRIMKLQHLMEEMERVIDDKIERNRVLEGILGFIVTSTQEAVVDPPYVAFGIRPNPGVWEYVRVNSEDLSVEAITPTEYLKFKERVYDEKWATDENAFEADFGAFDFQIPQLTLSSSIGNGLQFVSKFLTSKLSGKLAKTQAIVDYLLTLNHHEESLMINETLNSAAKLQMALVVADVFLSALPKDTAYHNFELRLKEWGFERGWGDTAGRVKETMGTLSEVLQAPDPVNMEKFFSRIPTIFKVVIFSVHGYFGQADVLGLPDTGGQVVYILDQVKALEEELLLRIKQQGLNVKPQILVVTRLIPDARGTKCHQEFEPINNTKHSHILRVPFQTEKGILRQWVSRFDIYPYLERFTHDATTKILDLMEGKPDLVIGNYTDGNLVASLMARKLGITQGTIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTVAMNASDFIITSTYQEIAGSKDRPGQYESHAAFTLPGLCRVVSGINVFDPKFNIVAPGADQSVYFPYTEKDKRLSQFHPAIEDLLFSKVDNTEHIGYLAERRKPIIFSMARLDVVKNLTGLVEWYAKNKRLRNLVNLVIVGAFFDPAKSKDREEIAEIKKMHDLIERYQLRGQFRWIAAQTNRYRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHINPLNGDESSNKIADFFEKCKVDPSHWNVISAAGLQRINECYTWKIYANKLVNMGNIYTFWRIVNKEQKEAKQRYIHMFYNLIFKNLVKTVPIPSDEHPQPVGKQASNKQLGSSGTRRSQSTLRRLLGV. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g01231 843 PANTHER - 8 810 IPR012820 GO:0005985|GO:0016157
Seca8g01231 843 Pfam Glycosyl transferases group 1 569 732 IPR001296 GO:0016757
Seca8g01231 843 Gene3D Glycogen Phosphorylase B; 284 801 - -
Seca8g01231 843 FunFam Sucrose synthase 12 149 - -
Seca8g01231 843 FunFam Sucrose synthase 150 279 - -
Seca8g01231 843 MobiDBLite consensus disorder prediction 815 837 - -
Seca8g01231 843 Gene3D - 11 149 - -
Seca8g01231 843 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 299 767 - -
Seca8g01231 843 Pfam Sucrose synthase 9 557 IPR000368 GO:0005985|GO:0016157
Seca8g01231 843 FunFam Sucrose synthase 531 758 - -
Seca8g01231 843 MobiDBLite consensus disorder prediction 809 843 - -
Seca8g01231 843 Gene3D Glycogen Phosphorylase B; 531 758 - -
Seca8g01231 843 Gene3D - 150 279 - -
Seca8g01231 843 NCBIfam sucrose synthase 26 806 IPR012820 GO:0005985|GO:0016157
Seca8g01231 843 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g01231 Seca-Chr8 19013578 19018734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g01231 5 811 Glycosyltransferase AT4G02280 56.877 0.0 984
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g01231 K00695 - gmx:100808482 1527.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g01231 8 19013578 19018734 Seca8g01231 8 19013578 19018734 ECH