Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi4g0821 ATGGCTTCTAAACCGACCTTGAAGAGAGCTGACTCAATGGCTGAAAACATGCCTGACGCCTTAAGGCAAAGCCGGTACCACATGAAGAGGTGCTTTGCGAGGTACATTGGAAAGGGGAAAAGGTTGATGAAACTCAACCATTTGATGGATGAAATGGAGGCTGTGATAGATGACAAGAATGAAAGAACCCAGGTCTTGGAGGGTGTGCTTGGCTTCATCTTGTGTTCCACTCAGGAGGCTGTGGCTATTCCTCCGCATGTTATCTTTTCCATAAGATCAAATCCTGGGTTTTGGGAGTATGTTAAGGTGAGCTCCGATGATCTTTCAGTGGAGGCCATTACAGCAGCAGACTATCTGAAATTCAAAGAAATGGTCTTTGATGAGAACTGGGCAAAAGATGACAATGCATTGGAATTGAATTTCTCGGCATTTGACTTTCCTATGCCTCGCTTGACTCTGTCATCTTCCATTGGAAATGGAGTTAGTCTTGTTTCCAAGTTTATGACTTCAAAGTTGAATGGGAACTCGCAAAGTGCACAACCTCTGGTGGATTATTTGCTATCACTAAATCATCAAGGAGAAAAACTTATGATAACTAATACCCTCAACACCCCCACAAAGCTCCAGATGGCACTAATAGTGGCTGAAGTTTTCGTCTCTGCACTTCCAAAAGACACGCCGTATCCAAGCTTTGAGCTAAGATTTAAGGAGTGGGGCTTCGAGAAGGGATGGGGCAATACAGCAGAACGAGTGAAGGAGACTATGAGATCACTTTCAGAGGCACTTGAAGCACCCGATCCAATGAATATGGAAAAGTTCTTGAGCAGGCTGCCAACTATATTCAATGTTGTAATATTCTCTCCTCATGGCTACTTTGGTCAGTCAGATGTCCTTGGTCTGCCTGATACCGGTGGGCAGGTAGTTTACATTCTGGATCAAGTTAGAGCATTGGAAGAGGAACTGCTCCTCAGAATAAAGCTGCAAGGGCTTAATGTGAAGCCTCAGATTCTTGTGGTCACACGACTCATACCTGACGCCCGGGGTACTAAGTGCAACCAGGAGTGGGAACCTATCGACAATACCAAGCACTCTACTATTCTCCGGATCCCATTTAGGACAGAGAAAGGAATACTGAACCAATGGGTTTCTCGGTTTGATATTTATCCTTACCTTGAGAGGTTTACACAGGATGCCACAGCCAAGATCATTGAGCACATGGAAGGGAAACCAGACCTTATCATTGGAAACTACACTGATGGGAATTTGGTGGCATCTCTCATGGCTACTAAACTTGGGATAACTCAGGGAACTATTGCACATGCCTTAGAGAAGACTAAGTACGAAGATTCGGATGTCAAATGGAAGGAATTAGAGCCCAAATATCATTTCTCATGCCAATTTACAGCTGATACAATTTCAATGAATGCAGCAGATTTCATTATCACAAGCACATACCAGGAAATTGCTGGAAGCAAAGATAGACCTGGACAGTATGAAAGCCACACTTCATTTACTCTTCCAGGGCTGTGTAGAGTTGTTTCAGGCATCAATCTCTTTGATCCCAAATTCAACATCGCTGCCCCTGGGGCCGACCAGTCTGTCTATTTCCCTTACATGGAGAGACACAAGCGACTCACGTCATTCCAACCTGCAATTGAAGAACTACTTTATAGCAAACAAGATAACAATGAGCATATTGGATTTCTAGCAGACAGAAAGAAACCTATCATCTTCTCAATGGCAAGGCTGGACATAGTGAAGAACATTACGGGGTTAACTGAGTGGTTCGGGAACAACAAGAGGCTGAGAAGTTTGGTTAATCTCGTTATTGTCGCAGGTTTCTTTGATCCATCCAAATCAAAAGATAGAGAAGAAATGGCTGAAATAAAAAAGATGCATACGCTGATAGAAAAATACCAACTTAAGGGTCAGATCAGATGGATAGCAGCACAGAATGACAGAAGGCGTAACGGCGAGCTCTACCGCTGCATAGCTGACACGAAAGGAGCTTTTGTCCAGCCTGCTATATATGAGGCATTTGGTCTAACCGTCATAGAGGCAATGAACTGTGGATTGCCCACCTTTGCTACAAATCAAGGAGGCCCAGCCGAAATTATTGTTGATGGGGTCTCAGGCTTCCATATTGACCCCAACATTGGAGATGAATCGAGCAACAAGATTGCTGATTTCTTTGAGAAGTGCAGGGATGATTCAGACCATTGGAACAAGATCTCCAAAGCAGGTCTACAACGCATAAACGAGTGCTACACATGGAAAATCTATGCAAACAAGGTGTTGAATATGGGGTGCGTTTTTAGCTTCTGGAGGCAGTTGAACACGGAACACAAGCAAGCAAAGCAAAAATACATTCACATGTTCTACACTCTCCAATTTAGGAACTTGGTGAAGAATATACCCATACCGGCTAGTGAAGTTCAGCCACCAGTGTCGAGGGCCATAACCAAAGTACCCCCTACACAGAGCACCACCACCAGGCGCTCACAGTCTCGACTGGGAAGGTAA 2523 0.4427 MASKPTLKRADSMAENMPDALRQSRYHMKRCFARYIGKGKRLMKLNHLMDEMEAVIDDKNERTQVLEGVLGFILCSTQEAVAIPPHVIFSIRSNPGFWEYVKVSSDDLSVEAITAADYLKFKEMVFDENWAKDDNALELNFSAFDFPMPRLTLSSSIGNGVSLVSKFMTSKLNGNSQSAQPLVDYLLSLNHQGEKLMITNTLNTPTKLQMALIVAEVFVSALPKDTPYPSFELRFKEWGFEKGWGNTAERVKETMRSLSEALEAPDPMNMEKFLSRLPTIFNVVIFSPHGYFGQSDVLGLPDTGGQVVYILDQVRALEEELLLRIKLQGLNVKPQILVVTRLIPDARGTKCNQEWEPIDNTKHSTILRIPFRTEKGILNQWVSRFDIYPYLERFTQDATAKIIEHMEGKPDLIIGNYTDGNLVASLMATKLGITQGTIAHALEKTKYEDSDVKWKELEPKYHFSCQFTADTISMNAADFIITSTYQEIAGSKDRPGQYESHTSFTLPGLCRVVSGINLFDPKFNIAAPGADQSVYFPYMERHKRLTSFQPAIEELLYSKQDNNEHIGFLADRKKPIIFSMARLDIVKNITGLTEWFGNNKRLRSLVNLVIVAGFFDPSKSKDREEMAEIKKMHTLIEKYQLKGQIRWIAAQNDRRRNGELYRCIADTKGAFVQPAIYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPNIGDESSNKIADFFEKCRDDSDHWNKISKAGLQRINECYTWKIYANKVLNMGCVFSFWRQLNTEHKQAKQKYIHMFYTLQFRNLVKNIPIPASEVQPPVSRAITKVPPTQSTTTRRSQSRLGR* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi4g0821 840 Gene3D - 12 149 - -
Vvi4g0821 840 NCBIfam sucrose synthase 26 806 IPR012820 GO:0005985|GO:0016157
Vvi4g0821 840 FunFam Sucrose synthase 531 758 - -
Vvi4g0821 840 Gene3D Glycogen Phosphorylase B; 284 801 - -
Vvi4g0821 840 Pfam Sucrose synthase 9 557 IPR000368 GO:0005985|GO:0016157
Vvi4g0821 840 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 299 767 - -
Vvi4g0821 840 Pfam Glycosyl transferases group 1 568 746 IPR001296 GO:0016757
Vvi4g0821 840 Gene3D Glycogen Phosphorylase B; 531 758 - -
Vvi4g0821 840 MobiDBLite consensus disorder prediction 820 840 - -
Vvi4g0821 840 MobiDBLite consensus disorder prediction 816 840 - -
Vvi4g0821 840 PANTHER - 7 808 IPR012820 GO:0005985|GO:0016157
Vvi4g0821 840 FunFam Sucrose synthase 12 149 - -
Vvi4g0821 840 FunFam Sucrose synthase 150 279 - -
Vvi4g0821 840 Gene3D - 150 279 - -
Vvi4g0821 840 Coils Coil 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi4g0821 Vvi-Chr4 10519232 10523197 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi4g0821 3 811 Glycosyltransferase AT4G02280 55.748 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi4g0821 K00695 - vvi:100266759 1671.37