Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g01734 ATGGCTCCACCACCTGCTTTGAAGCGCACAAATTCTCTAGCAGATAACATGCCCGATGCATTGAAACATAGTAGGTACCATATGAAGAAGTGCTTTGCTAAGTACCTAGAGAAAGGGAGAAGGATCATGAAACTTCACCATTTGATGGAAGAAGTTGAACGAATTATAGATGATAAAATTGAAAGAAATCAAGTTTTGGAAGGCATTCTAGGCTTCATATTGAGCTCTATACAGGAAGCTGTTGTTGATCCACCATATGTTGCATTTTCTATTAGGCCTAATCCAGGAGTTTGGGAATATGTACGTGTCAACTCCGAGGATCTTTCGGTTGATGCTATTACCCCTACTGATTACCTCAAATCCAAGGAAAGGGTATATGACCAAAAATGGGCAAATGATGAAAATGCATTTGAAGCAGACTTTGGAGCATTTGATTTTGGGATTCCGAAATTAACTCTATCTTCTTCAATCGGAAATGGACTTCACTTTGTTTCAAAGTTCTTAGCTTCAAAGACAACCGGGAAATTGACAAAAACACAGGCTATAGTGGACTACTTGTTGAGATTAAATCATCACGGAGAAAGTCTAATGATAAATGACACCTTGAGCTCAGCTGCAAAACTTCAGCAAGCATTAATTGTGGCTAATGTTTTCGTTTCAGCAATTCCCAAGGACACTTCATATCACAATTTTGAGCTAAGGTTAAAGGAGTGGGGTTTTGAGAAAGGATGGGGAGATACCGCAGGTAGGGTGAAGGAGACAATGAGAACTTTATCAGAAATACTCCAAGCACCTGACCCAATTAATCTAGAGAAATTTTTCAGCAGAATTCCTACAATGTTTAAAGTAGTGATCTTCTCAATTCATGGTTATTTTGGGCAAGAAGATGTTCTTGGCTTGCCAGACACTGGTGGCCAGGTAGTTTACATATTGGATCAAGTCAAGGCTTTGGAGGAAGAGTTACTTCTAAAAATTAAGCAACAAGGGCTAAATTTTGAACCTCAAATTCTTGTGGTAACAAGGTTGATACCGGATGCTAGAGGAACCAAGTGCCACCAGGAGTTTGAACCAATCCATGGTACCAAACACTCCCACATTCTACGTGTGCCTTTTTATACAGAAAAAGGAATTTTACGTCAATGGGTTTCTCGCTTCGACGTTTATCCCTATCTTGAGAGGTTTACTCAGGATGCAACAACCAAGATTTTGGACCTAATGGAAGGGAAACCTGATCTTGTTATAGGAAATTACACAGATGGAAATTTAGCAGCATCTCTAATGGCTAGAAAACTTGGGATAACTCAGGCAACTATAGCACATGCTTTGGAGAAAACCAAGTATGAAGACTCAGATGTCAAGTGGAAAGAGTTAGATCCTAAATATCACTTCTCATGTCAATTCATGGCTGATACAATTGCAATGAATTCATCCGATTTCATCATAACCAGTACATACCAAGAAATCGCGGGAAGCAAAGATAGACCTGGACAGTATGAAAGCCATGCTGCATTTACTCTTCCAGGGCTTTGTAGGGTTGTCTCAGGGATAAATGTGTTTGATCCTAAGTTCAATATAGCTGCACCAGGTGCTGATCAAAGTATCTATTTCACTTACACAGAAAAAGACAAAAGGCTTTCTCAATTTCACCCTGCCATTGAAGATCTTCTCTCTAATAGAGTGGATAACAATGAACATATTGGATATCTAGCGGAGAGGAGGAAACCTATAATCTTCTCAATGGCAAGGCTTGATGTAGTGAAGAACTTAAGCGGATTAGTCGAGTGGTATGGAAAGAACAGGAGATTAAGAAACTTGGTGAACCTTGTCATAGTTGGTGGCTTCTTTGACCCTTCAAAATCAAAAGATAGAGAGGAAATGGCAGAAATAAAGAAGATGCATGATTTAATTCGAAAGTATCAATTAAACGGCCAATTCAGATGGATTGCTGCGCAGACTGATCGATTTCGCAACGGAGAGCTGTATCGCTGCATTGCTGATACAAAGGGAGCTTTTGTGCAGCCTGCTTTGTATGAAGCATTTGGATTAACTGTCATTGAAGCAATGAACTGCGGCTTGCCAACTTTTGCTACTAATCAAGGAGGTCCGGCAGAAATAATTGTTGATGGAGTCTCAGGATTCCACATTGATCCCCTAAACGGAGATGGATCAAGCAACAAAATTGCTGATTTCTTTGAAAAATGCAAAGTAGATCCATCCTATTGGAACATGATTTCTGAGTTCGGATTGCAGCGCATAAATGAATGCTATACATGGAAGATATATGCAAACAAGTTGGTAAATATGGGAAACATTTACACCTTTTGGAGGCATGTGAACAAGGAGCAAAAAGAGGCAAAGCAAAGATACATCCATATGTTCTATAATTCCTTATTCAAGAATTTGGTTAAGAATGTACCTATTCCAAGTGATGAACCTCAAAAACCAATAGACAACCAACAAAGTCTCAAACAACAGGGCTCTAGCACCAGACGTTCACAGTCCACATTGAGAAGGTTTTTACCTGGAGCTTAA 2532 0.3953 MAPPPALKRTNSLADNMPDALKHSRYHMKKCFAKYLEKGRRIMKLHHLMEEVERIIDDKIERNQVLEGILGFILSSIQEAVVDPPYVAFSIRPNPGVWEYVRVNSEDLSVDAITPTDYLKSKERVYDQKWANDENAFEADFGAFDFGIPKLTLSSSIGNGLHFVSKFLASKTTGKLTKTQAIVDYLLRLNHHGESLMINDTLSSAAKLQQALIVANVFVSAIPKDTSYHNFELRLKEWGFEKGWGDTAGRVKETMRTLSEILQAPDPINLEKFFSRIPTMFKVVIFSIHGYFGQEDVLGLPDTGGQVVYILDQVKALEEELLLKIKQQGLNFEPQILVVTRLIPDARGTKCHQEFEPIHGTKHSHILRVPFYTEKGILRQWVSRFDVYPYLERFTQDATTKILDLMEGKPDLVIGNYTDGNLAASLMARKLGITQATIAHALEKTKYEDSDVKWKELDPKYHFSCQFMADTIAMNSSDFIITSTYQEIAGSKDRPGQYESHAAFTLPGLCRVVSGINVFDPKFNIAAPGADQSIYFTYTEKDKRLSQFHPAIEDLLSNRVDNNEHIGYLAERRKPIIFSMARLDVVKNLSGLVEWYGKNRRLRNLVNLVIVGGFFDPSKSKDREEMAEIKKMHDLIRKYQLNGQFRWIAAQTDRFRNGELYRCIADTKGAFVQPALYEAFGLTVIEAMNCGLPTFATNQGGPAEIIVDGVSGFHIDPLNGDGSSNKIADFFEKCKVDPSYWNMISEFGLQRINECYTWKIYANKLVNMGNIYTFWRHVNKEQKEAKQRYIHMFYNSLFKNLVKNVPIPSDEPQKPIDNQQSLKQQGSSTRRSQSTLRRFLPGA 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g01734 843 NCBIfam sucrose synthase 26 806 IPR012820 GO:0005985|GO:0016157
Vifa1g01734 843 Gene3D - 11 149 - -
Vifa1g01734 843 Pfam Sucrose synthase 9 556 IPR000368 GO:0005985|GO:0016157
Vifa1g01734 843 Gene3D Glycogen Phosphorylase B; 531 758 - -
Vifa1g01734 843 Pfam Glycosyl transferases group 1 569 732 IPR001296 GO:0016757
Vifa1g01734 843 FunFam Sucrose synthase 12 149 - -
Vifa1g01734 843 MobiDBLite consensus disorder prediction 813 836 - -
Vifa1g01734 843 Gene3D Glycogen Phosphorylase B; 284 801 - -
Vifa1g01734 843 MobiDBLite consensus disorder prediction 808 843 - -
Vifa1g01734 843 FunFam Sucrose synthase 150 279 - -
Vifa1g01734 843 Gene3D - 150 279 - -
Vifa1g01734 843 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 299 767 - -
Vifa1g01734 843 PANTHER - 7 810 IPR012820 GO:0005985|GO:0016157
Vifa1g01734 843 FunFam Sucrose synthase 531 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g01734 Vifa-Chr1 283143287 283147853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g01734 5 811 Glycosyltransferase AT4G02280 56.506 0.0 968
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g01734 K00695 - gmx:100792097 1456.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g01734 1 283143287 283147853 Vifa1g01734 1 283143287 283147853 ECH