Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0463 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0465 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0466 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0467 . . . . . Adu10g01367 . . . . . . . . . . . . Apr3g1659 . . . . . . . Bva13g00292 Bva14g00373 Car06g01723 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02473 . . . . . . . . . . . . Mal7g3362 . . . . . . . Mtr4g2799 . . . . Phco8g00063 . . . . . . . . . . . . . Pvu3g3009 . . . . . Spst3g02179 . . Sto2g0603 Sto10g0247 . . . . Tsu02g03340 . . . . . . Vimu11g01190 . . . . . .
Vvi3g0468 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0469 . . . . . . . . . . . . . . . . . . Apr3g1662 . . . . . . . Bva13g00291 Bva14g00372 Car06g01722 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g3365 . . . . . . . Mtr4g2803 . . . . . . . Psa7g2879 . . . . . . . . . . . . . . . . . . . . Sto10g0246 Tpr4g1879 . . . Tsu02g03341 . . . . . . . . . . . . .
Vvi3g0470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0471 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0472 . . . . . Adu10g01361 . . . . . . . . . . . . Apr3g1663 . . . . . . . . Bva14g00371 Car06g01720 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02472 . . . . . . . . . . . . Mal7g3367 . . . . . . . Mtr4g2804 . . . . Phco8g00062 . . . . . . . . . . . . . Pvu3g3010 . . . . . Spst3g02178 . . Sto2g0607 Sto10g0244 Tpr4g1877 . . . Tsu02g03343 . . . . . . Vimu11g01189 . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0463 Chr3 3992899 4010034 +
Vvi Vvi3g0464 Chr3 4010839 4011171 -
Vvi Vvi3g0465 Chr3 4012517 4015000 +
Vvi Vvi3g0466 Chr3 4017527 4019315 +
Vvi Vvi3g0467 Chr3 4022663 4023406 +
Adu Adu10g01367 Chr10 45503482 45504681 -
Apr Apr3g1659 Chr3 32157476 32159268 +
Bva Bva13g00292 Chr13 1368819 1369832 -
Bva Bva14g00373 Chr14 1846283 1847245 -
Car Car06g01723 Chr06 17001848 17002883 -
Lapu Lapu3g02473 Chr3 46674375 46675070 -
Mal Mal7g3362 Chr7 98445677 98446327 +
Mtr Mtr4g2799 Chr4 41679794 41680738 +
Phco Phco8g00063 Chr8 552155 552835 -
Pvu Pvu3g3009 Chr3 51831261 51832171 +
Spst Spst3g02179 Chr3 60821657 60824909 -
Sto Sto2g0603 Chr2 5120508 5121401 +
Sto Sto10g0247 Chr10 2042226 2043158 -
Tsu Tsu02g03340 Chr02 37384237 37385239 +
Vimu Vimu11g01190 Chr11 12885861 12887962 -
Vvi Vvi3g0468 Chr3 4023999 4025556 +
Vvi Vvi3g0469 Chr3 4027276 4030376 +
Apr Apr3g1662 Chr3 32164495 32168141 -
Bva Bva13g00291 Chr13 1363107 1367065 -
Bva Bva14g00372 Chr14 1840501 1844354 -
Car Car06g01722 Chr06 16987953 16991457 +
Mal Mal7g3365 Chr7 98473944 98477408 -
Mtr Mtr4g2803 Chr4 41719416 41723223 -
Psa Psa7g2879 Chr7 206568604 206572473 -
Sto Sto10g0246 Chr10 2033098 2037585 +
Tpr Tpr4g1879 Chr4 19758892 19762594 +
Tsu Tsu02g03341 Chr02 37394615 37398130 -
Vvi Vvi3g0470 Chr3 4031519 4031713 -
Vvi Vvi3g0471 Chr3 4031916 4040528 -
Vvi Vvi3g0472 Chr3 4041065 4046927 +
Adu Adu10g01361 Chr10 44762143 44769276 -
Apr Apr3g1663 Chr3 32179885 32182489 +
Bva Bva14g00371 Chr14 1836649 1839553 -
Car Car06g01720 Chr06 16971040 16974701 -
Lapu Lapu3g02472 Chr3 46661974 46664655 -
Mal Mal7g3367 Chr7 98482613 98483552 +
Mtr Mtr4g2804 Chr4 41725096 41728289 +
Phco Phco8g00062 Chr8 545397 551782 -
Pvu Pvu3g3010 Chr3 51837384 51841863 +
Spst Spst3g02178 Chr3 60814526 60821550 -
Sto Sto2g0607 Chr2 5159215 5161965 +
Sto Sto10g0244 Chr10 2029018 2031191 -
Tpr Tpr4g1877 Chr4 19732912 19737194 -
Tsu Tsu02g03343 Chr02 37420003 37423551 +
Vimu Vimu11g01189 Chr11 12852575 12857230 -