Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco8g00063 ATGTCTTCCTCCGCCTCCTTCTCCGCCGCCACTCTCACCACCGAGCAAGAACTCTCCGTCATCGTCGCCGCTCTCACCAACGTCGTCGCCGGCTCCACCTCCTCCCTCCCGGACTTCCGCCTCCCCAACACCTCCCAGCCTCTCGCCGCAAACACCTTCGACCGGATGGTCCCGCCGCCCACTATGGACACGTGTCGCGAGTGCAAAATCGCCGGCTGCTTGGGCTGCAATTTCTTCCCCGAGGAGAAAAAGAAACAGAAGAGGGCCAAGAAGAAGTACAGAGGCGTCAGGCAGAGGCCGTGGGGCAAGTGGGCGGCGGAGATTCGCGACCCACGCCGTGCGGCCCGGGTCTGGCTCGGAACTTTCAACACGGCCGAGGAAGCCGCCCGGGCCTACGACAATGCCGCCATCGAGTTCCGCGGCCCACGGGCCAAGCTCAATTTTCCCGTAGTGGACGAGTCCTTAAGCATGCAGCAGAGCGAAACAGAGACCGTTGCAGCGGAAGAGCAACTAAAGAACGAGAATCCCAACCAGGGCATGGAAGTGAACGCGCTGGAATTCGGGAAAAAAGATAGCGAATTCTGGGACTGGATTGGCCAAGCTGATTTTCACCAGCTGATGATGATGGATTTCGCTGCAGATTCTTCCGACTCTGCCACCGGGAACACTCTCAGTTCATGA 681 0.5962 MSSSASFSAATLTTEQELSVIVAALTNVVAGSTSSLPDFRLPNTSQPLAANTFDRMVPPPTMDTCRECKIAGCLGCNFFPEEKKKQKRAKKKYRGVRQRPWGKWAAEIRDPRRAARVWLGTFNTAEEAARAYDNAAIEFRGPRAKLNFPVVDESLSMQQSETETVAAEEQLKNENPNQGMEVNALEFGKKDSEFWDWIGQADFHQLMMMDFAADSSDSATGNTLSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco8g00063 226 ProSiteProfiles AP2/ERF domain profile. 92 149 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 Gene3D AP2/ERF domain 91 151 IPR036955 GO:0003700|GO:0006355
Phco8g00063 226 SMART rav1_2 92 155 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 SUPERFAMILY DNA-binding domain 92 150 IPR016177 GO:0003677
Phco8g00063 226 Pfam AP2 domain 92 141 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 PANTHER DNA-BINDING DOMAIN 64 172 IPR044808 GO:0003700|GO:0009873
Phco8g00063 226 CDD AP2 93 151 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 PRINTS Ethylene responsive element binding protein signature 115 131 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 PRINTS Ethylene responsive element binding protein signature 93 104 IPR001471 GO:0003700|GO:0006355
Phco8g00063 226 FunFam Ethylene-responsive transcription factor 2 91 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco8g00063 Phco-Chr8 552155 552835 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco8g00063 AP2 5.1e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco8g00063 8 552155 552835 Phco8g00063 8 552155 552835 ECH