Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0465 ATGGATATTGCTACTTCTCTTTCATGTCTCCTGTTCTTCATCACCATCCTTCCGGCCTTAACAGCTTCTCCAATATTGTTTCAGGGTTTCAATTGGGAATCATCCAAAAAGGAAGGAGGGTGGTACAACTTCCTCATCAACTCCATTCCTGAACTGGCTGCTTCTGGAATCACTCATGTTTGGCTTCCTCCACCCTCTCAGTCTGTTTCACCTGAAGGGTACATGCCAGGAAGGCTTTATGATCTGAATGCATCCAAATATGGCACCCAAGATGAACTGAAAACACTGATAAAGGTGTTTCACAGCAAGGGGGTCCAGTGCATAGCAGACATAGTTATAAACCACAGAACTGCAGAGAAGCAAGACGCAAGAGGAATATGGGCCATCTTTGAAGGAGGAACCCCAGATGATCGCCTTGACTGGACCCCATCTTTCATTTGCAAGGACGACACTCCTTATTCCGACGGCACCGGAAACCCTGATTCTGGAGATGACTACAGTGCCGCACCAGACATCGACCACATCAACCCACGGGTTCAGCAAGAGCTAATAGACTGGATGAACTGGCTGAAGATTGAAATAGGGTTTGATGGATGGCGGTTTGATTTTGCTAGAGGATTCTCCCCAGCTTTTACCAAGTTTTATATGGCAAAGACCAGGCCAAAATTTGCAGTAGGGGAAATTTGGAAGTCTCTTTCTTATAGAAGTGATGGTAAGCCAAGCTACAACCAAGATAGTCATCGGCGTGAGCTTGTGGAATGGGTGAGAGGCGCTGGAGGAGCAGTGAATGCATTTGATTTTACAACCAAAGGGATACTCCAAGCTGCAGTGGAAGGGGAACTGTGGAGAATGAAGGATTTGAATGGAAAGCCCCCAGGAATGATTGGGTTAATGCCTGGAAATGCTGTGACTTTCATAGATAATCATGATACAGGTTCCACTCTGCAACACTGGCCTTTCCCATCAGACAAAGTCATGCAGGGATATGCTTATATTCTCACCCATCCTGGGATTCCATCCATATTCTATGACCATTTCTTTGAGTGGGGTCTGAAAGAGGAGATTATGAAGCTGATCATAATCAGAAGCAGGAACAGGATCAAGCCCAACAGCGCAGTGCGGATTCTGGCCTCTGACTCGGACCTCTATGTAGCTGCAATAGATGGGAAGATCATTGTCAAGATTGGGCCAAGGTTTGATGTCGGGAACCTTGTTCCTAAATCATTCAAAAAAATTGCCACTTCTGGAAAAGATTATTGTGTATGGGAGAAAAAATAA 1278 0.4538 MDIATSLSCLLFFITILPALTASPILFQGFNWESSKKEGGWYNFLINSIPELAASGITHVWLPPPSQSVSPEGYMPGRLYDLNASKYGTQDELKTLIKVFHSKGVQCIADIVINHRTAEKQDARGIWAIFEGGTPDDRLDWTPSFICKDDTPYSDGTGNPDSGDDYSAAPDIDHINPRVQQELIDWMNWLKIEIGFDGWRFDFARGFSPAFTKFYMAKTRPKFAVGEIWKSLSYRSDGKPSYNQDSHRRELVEWVRGAGGAVNAFDFTTKGILQAAVEGELWRMKDLNGKPPGMIGLMPGNAVTFIDNHDTGSTLQHWPFPSDKVMQGYAYILTHPGIPSIFYDHFFEWGLKEEIMKLIIIRSRNRIKPNSAVRILASDSDLYVAAIDGKIIVKIGPRFDVGNLVPKSFKKIATSGKDYCVWEKK* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0465 425 SUPERFAMILY (Trans)glycosidases 25 353 IPR017853 -
Vvi3g0465 425 Pfam Alpha-amylase C-terminal beta-sheet domain 364 423 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi3g0465 425 MobiDBLite consensus disorder prediction 150 171 - -
Vvi3g0465 425 Gene3D - 367 425 IPR013780 -
Vvi3g0465 425 Gene3D Glycosidases 24 366 - -
Vvi3g0465 425 CDD AmyAc_arch_bac_plant_AmyA 25 373 - -
Vvi3g0465 425 PRINTS Alpha-amylase signature 104 115 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0465 425 PRINTS Alpha-amylase signature 300 312 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0465 425 PRINTS Alpha-amylase signature 196 207 IPR006046 GO:0004556|GO:0005975|GO:0043169
Vvi3g0465 425 PIRSF Alpha-amylase_plant 1 425 IPR013775 GO:0004556|GO:0005509|GO:0005975
Vvi3g0465 425 Pfam Alpha amylase, catalytic domain 52 343 IPR006047 GO:0005975
Vvi3g0465 425 SMART aamy 24 368 IPR006047 GO:0005975
Vvi3g0465 425 PANTHER ALPHA-AMYLASE 26 423 - -
Vvi3g0465 425 SMART alpha-amyl_c2 363 424 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi3g0465 425 SUPERFAMILY Glycosyl hydrolase domain 367 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0465 Vvi-Chr3 4012517 4015000 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0465 7 425 Glycoside Hydrolase AT4G25000 62.945 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0465 K01176 - vvi:100250317 889.797