Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0469 ATGGGAGGATCACACAGTCGCGAAGGTCTCGACCTTTCTGATTCATCAGATGACGAAGTAGAAGAAGAAGAGGAGGAGCAATACGACGACGTTTCCGACCACCCTACTTCTTCTTCAGGTACTCAACGCAAAACCCTAACCCCGACCTCTATCTCAGCTTCTCTTGATGAGGTTGATGCGAAGCTCAAGGATCTCAAGCTCAAGTACCCTTCTCAGAGCCCTGATTTGCCCAATGCTGTCAAGCTCTACCTTCACATCGGTGGCAACGCCCCCAAAGCGAAATGGATTGTTTCCGAGAAAATTGCCTTCTATTCCCTCGTGAAGACGTGTAAAATGGACGGTGGTGATGAGGATGAGGATGACGGTGAGGGTGGTGGTGGCAGTGGGAGTGAGTTGTTCTGGGTGTTGAAGGTGGGGTCGAAGATTCGAGCTAGGGTTTCCACGGAGATGCAAATTAAGATGTTTGGGGAGCAGAGGAGGGTTGATTTTGTGTGCAAAGGCGTGTGGGCGATGAAGTTTTTCAGGGATGGTGACTATCGGAGTTTTGTGACTCGGTTTCAGGATTGCTTGTTTGAGAATGTGTATGGGGTGAAGGCGACGGAGGAGAATAAAGTAAAGGTTTATGGAAAAGACTTTATCGGGTGGTTGAAGCCGGAGGTGGCTGACGATTCCATGTGGGAGGATGCCGAGGAGGGGCCGTGGAAAAGCCCTCAGGCGAGATCGACCAATGATTTGATGGAGGAGTTTGAGGAGGCAGCCACAAATGGAGGAATCCAAAGCTTGGCGTTGGGGGCATTGGATAATAGTTTCTTGGTGGGTGATTCAGGTGTTCAGGTTGTTAAGAATTTTAGCCATGGGATTCATGGAAAGGGGGTTCATGTCAAATTTGATAATGGGGGGTATAAGGGAGGTGCAACCCCAAAGAAGGGGCTTTTGATGAAGGCGGAGACAAACATGCTTCTTATGAGCCCATTGAAGGATGGGAAGCCTCATGCAACAGGGCTTCACCAGCTTGATATTGAGACGGGGAAGATTGTGACCGAATGGAAGTTTGAGAAGGATGGGACAGATATTACCATGAGGGATGTTACAAATGATGCTAAGGGTTCACAATTGGATCCTTCGCAATCAACCTTTTTGGGATTGGATGATAATAGATTGTGCCAATGGGATATGCGGGAGAAGAGAGGGATGGTGCAGAATATCACCACTGCTAGTTCACCTGTATTGCACTGGACACAAGGGCATCAATTCTCTAGAGGGACAAATTTTCAGTGCTTTGCTACTACTGGAGATGGTTCAATTGTTGTTGGGTCACTGGATGGGAAGATAAGGTTGTATTCGAGGACCTCTATGAGACAGGCTAAGACTGCATTCCCGGGGCTTGGCTCACCTATTACTCATGTTGATGTTACATATGATGGGAAATGGATATTGGGTACAGCAGACACTTTTTTGATCCTTATCTGCACTTCGTTCACTGACAAGGATGGGAAGACAAAGACTGGATTCAGTGGTCGTATGGGAAATAAGATCCCAGCTCCCAGACTGTTGAAGCTGACTCCTGTTGATTCACATATGGCTGGGGTGGATAATAAATTTCACGGTGGCCAATTTTCATGGGTGACTGAGAATGGGAAACAAGAGCGGCATCTAGTTGCAACAGTGGGCAAGTTCAGCGTGATATGGAACTTCCAGCAGGTGAAAAACAGTAGTCATGAGTGCTACCAGAATCAGCAAGGGCTCAAGAGCTGTTATTGTTACAAGATTGTACTGAAGGATGAATCCATTGTCGAGAGTCGATTCATGCACGACAAGTTTGCAGTTAGTGACTCACCGGAAGCTCCACTGGTGGTGGCAACCCCATTGAAAGTCAGCTCTTTCAGCATTTCTAATAAGCGATGA 1905 0.474 MGGSHSREGLDLSDSSDDEVEEEEEEQYDDVSDHPTSSSGTQRKTLTPTSISASLDEVDAKLKDLKLKYPSQSPDLPNAVKLYLHIGGNAPKAKWIVSEKIAFYSLVKTCKMDGGDEDEDDGEGGGGSGSELFWVLKVGSKIRARVSTEMQIKMFGEQRRVDFVCKGVWAMKFFRDGDYRSFVTRFQDCLFENVYGVKATEENKVKVYGKDFIGWLKPEVADDSMWEDAEEGPWKSPQARSTNDLMEEFEEAATNGGIQSLALGALDNSFLVGDSGVQVVKNFSHGIHGKGVHVKFDNGGYKGGATPKKGLLMKAETNMLLMSPLKDGKPHATGLHQLDIETGKIVTEWKFEKDGTDITMRDVTNDAKGSQLDPSQSTFLGLDDNRLCQWDMREKRGMVQNITTASSPVLHWTQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSRTSMRQAKTAFPGLGSPITHVDVTYDGKWILGTADTFLILICTSFTDKDGKTKTGFSGRMGNKIPAPRLLKLTPVDSHMAGVDNKFHGGQFSWVTENGKQERHLVATVGKFSVIWNFQQVKNSSHECYQNQQGLKSCYCYKIVLKDESIVESRFMHDKFAVSDSPEAPLVVATPLKVSSFSISNKR* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0469 634 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 632 IPR040458 -
Vvi3g0469 634 MobiDBLite consensus disorder prediction 1 52 - -
Vvi3g0469 634 MobiDBLite consensus disorder prediction 33 52 - -
Vvi3g0469 634 SUPERFAMILY Putative isomerase YbhE 257 532 - -
Vvi3g0469 634 Gene3D - 234 514 IPR015943 GO:0005515
Vvi3g0469 634 Pfam VID27 C-terminal WD40-like domain 305 577 IPR013863 -
Vvi3g0469 634 MobiDBLite consensus disorder prediction 14 30 - -
Vvi3g0469 634 FunFam Vacuolar import/degradation Vid27-related protein 317 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0469 Vvi-Chr3 4027276 4030376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0469 57 634 Acyl Lipid Metabolism Gene Families AT3G19240 74.533 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0469 - - vvi:100265781 1229.54