Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0453 . . . . . . . . Aev03g0244 . Ahy20g1571 . Aip10g01841 . . . . . Apr3g1651 . . . . . . . Bva13g00299 Bva14g00380 Car06g01732 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02481 . . . . . . . . . . . . Mal7g3352 . . . . . . . Mtr4g2789 . . . . Phco8g00071 . . . . . . . . . . . . . Pvu3g3003 . . . . . Spst3g02191 . . Sto2g0597 . Tpr2g3587 . . . Tsu02g03326 . . . . . . Vimu11g01202 . . . . . .
Vvi3g0454 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0455 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0456 . . . . . . . . . . . . . . . . . . Apr3g1653 . . . . . . . Bva13g00297 Bva14g00378 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0457 . . . . . . . . . . . . . . . . . . Apr3g1655 . . . . . . . Bva13g00296 Bva14g00377 Car06g01728 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02477 . . . . . . . . . . . . Mal7g3355 . . . . . . . Mtr4g2793 . . . . Phco8g00068 . . . . . . . . . . . . . Pvu3g3005 . . . . . Spst3g02188 . . Sto2g0600 Sto10g0257 Tpr4g1886 . . . Tsu02g03333 . . . . . . Vimu11g01199 . . . . . .
Vvi3g0458 . . . . . Adu10g01374 . . . . . . . . . . . . Apr3g1656 . . . . . . . Bva13g00295 Bva14g00376 Car06g01726 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02476 . . . . . . . . . . . . Mal7g3356 . . . . . . . Mtr4g2794 . . . . Phco8g00067 . . . . . . . . . . . . . Pvu3g3006 . . . . . Spst3g02187 . . . Sto10g0256 Tpr4g1885 . . . Tsu02g03334 . . . . . . Vimu11g01195 . . . . . .
Vvi3g0459 . . . . . Adu10g01372 . . . . . . . . . . . . Apr3g1657 . . . . . . . Bva13g00294 Bva14g00375 Car06g01725 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02475 . Lasa4g01950 . . . . . . . . . . Mal7g3359 . . . . . . . Mtr4g2796 . . . . Phco8g00065 . . . . . . . . . . . . . Pvu3g3007 . . . . . Spst3g02185 . . Sto2g0601 . Tpr4g1883 . . . Tsu02g03338 . . . . . . Vimu11g01194 . . . . . .
Vvi3g0460 . . . . . Adu10g01368 . . . . . . . . . . . . Apr3g1658 . . . . . . . Bva13g00293 Bva14g00374 Car06g01724 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02474 . . . . . . . . . . . . Mal7g3360 . . Mepo1g02390 . Mesa29g02556 . . Mtr4g2797 . . Phac3g04547 . Phco8g00064 . . . . . . . . . . . . . Pvu3g3008 . . . . . Spst3g02183 . . . Sto10g0249 Tpr4g1881 . . Trre15g01839 Tsu02g03339 . . . . . . Vimu11g01192 . . . . . .
Vvi3g0461 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0462 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Lasa Lasa4g01950 Chr4 396178364 396180919 +
Vvi Vvi3g0453 Chr3 3887515 3890462 -
Aev Aev03g0244 Chr03 1889183 1890825 +
Ahy Ahy20g1571 Chr20 51750816 51754518 -
Aip Aip10g01841 Chr10 48284807 48287157 -
Apr Apr3g1651 Chr3 32013516 32017793 -
Bva Bva13g00299 Chr13 1414360 1417750 +
Bva Bva14g00380 Chr14 1888110 1891450 +
Car Car06g01732 Chr06 17147239 17149174 +
Lapu Lapu3g02481 Chr3 46770369 46774576 +
Mal Mal7g3352 Chr7 98290365 98291834 -
Mtr Mtr4g2789 Chr4 41556748 41560389 -
Phco Phco8g00071 Chr8 629254 631325 +
Pvu Pvu3g3003 Chr3 51759723 51763526 -
Spst Spst3g02191 Chr3 61454327 61456460 +
Sto Sto2g0597 Chr2 5049474 5055342 -
Tpr Tpr2g3587 Chr2 39019919 39023243 +
Tsu Tsu02g03326 Chr02 37243155 37246676 -
Vimu Vimu11g01202 Chr11 13101579 13103533 +
Vvi Vvi3g0454 Chr3 3890515 3891598 -
Vvi Vvi3g0455 Chr3 3899244 3903031 +
Vvi Vvi3g0456 Chr3 3907433 3915794 +
Apr Apr3g1653 Chr3 32040705 32044474 +
Bva Bva13g00297 Chr13 1405294 1408447 -
Bva Bva14g00378 Chr14 1878358 1881979 -
Vvi Vvi3g0457 Chr3 3918725 3928861 +
Apr Apr3g1655 Chr3 32063637 32069282 +
Bva Bva13g00296 Chr13 1399725 1404424 -
Bva Bva14g00377 Chr14 1872304 1877029 -
Car Car06g01728 Chr06 17090451 17098535 -
Lapu Lapu3g02477 Chr3 46737620 46743604 -
Mal Mal7g3355 Chr7 98350893 98356299 +
Mtr Mtr4g2793 Chr4 41595449 41601052 +
Phco Phco8g00068 Chr8 606584 610885 -
Pvu Pvu3g3005 Chr3 51780902 51785798 +
Spst Spst3g02188 Chr3 61109742 61115115 -
Sto Sto2g0600 Chr2 5081942 5086591 +
Sto Sto10g0257 Chr10 2094414 2099486 -
Tpr Tpr4g1886 Chr4 19857393 19865501 -
Tsu Tsu02g03333 Chr02 37308074 37313425 +
Vimu Vimu11g01199 Chr11 13043981 13052629 -
Vvi Vvi3g0458 Chr3 3930224 3933575 +
Adu Adu10g01374 Chr10 47000295 47005516 -
Apr Apr3g1656 Chr3 32072039 32075441 +
Bva Bva13g00295 Chr13 1396477 1398851 -
Bva Bva14g00376 Chr14 1869056 1871447 -
Car Car06g01726 Chr06 17080046 17083247 -
Lapu Lapu3g02476 Chr3 46729765 46733875 -
Mal Mal7g3356 Chr7 98358354 98360913 +
Mtr Mtr4g2794 Chr4 41602849 41605765 +
Phco Phco8g00067 Chr8 600633 606268 -
Pvu Pvu3g3006 Chr3 51788237 51791770 +
Spst Spst3g02187 Chr3 61098989 61101901 -
Sto Sto10g0256 Chr10 2088466 2088813 -
Tpr Tpr4g1885 Chr4 19852447 19856726 -
Tsu Tsu02g03334 Chr02 37316457 37320043 +
Vimu Vimu11g01195 Chr11 12980160 12983593 -
Vvi Vvi3g0459 Chr3 3944496 3947061 +
Adu Adu10g01372 Chr10 46661643 46665170 -
Apr Apr3g1657 Chr3 32123001 32126856 +
Bva Bva13g00294 Chr13 1382419 1385116 -
Bva Bva14g00375 Chr14 1859220 1864570 -
Car Car06g01725 Chr06 17063523 17066988 -
Lapu Lapu3g02475 Chr3 46699800 46703090 -
Lasa Lasa4g01950 Chr4 396178364 396180919 +
Mal Mal7g3359 Chr7 98405768 98408427 +
Mtr Mtr4g2796 Chr4 41657163 41660135 +
Phco Phco8g00065 Chr8 569650 572405 -
Pvu Pvu3g3007 Chr3 51811477 51815171 +
Spst Spst3g02185 Chr3 61028346 61031499 -
Sto Sto2g0601 Chr2 5100042 5103447 +
Tpr Tpr4g1883 Chr4 19812541 19816412 -
Tsu Tsu02g03338 Chr02 37359585 37362776 +
Vimu Vimu11g01194 Chr11 12935260 12937571 -
Vvi Vvi3g0460 Chr3 3955099 3979284 +
Adu Adu10g01368 Chr10 45784394 45788791 -
Apr Apr3g1658 Chr3 32140048 32145344 +
Bva Bva13g00293 Chr13 1372763 1377306 -
Bva Bva14g00374 Chr14 1849956 1854242 -
Car Car06g01724 Chr06 17017541 17023727 -
Lapu Lapu3g02474 Chr3 46683122 46687388 -
Mal Mal7g3360 Chr7 98428786 98433707 +
Mepo Mepo1g02390 Chr1 24727106 24733738 -
Mesa Mesa29g02556 Chr29 35026860 35029772 -
Mtr Mtr4g2797 Chr4 41668153 41674189 +
Phac Phac3g04547 Chr3 43362732 43364517 +
Phco Phco8g00064 Chr8 559004 564339 -
Pvu Pvu3g3008 Chr3 51822079 51827389 +
Spst Spst3g02183 Chr3 60892656 60897838 -
Sto Sto10g0249 Chr10 2047595 2049790 -
Tpr Tpr4g1881 Chr4 19776761 19783253 -
Trre Trre15g01839 Chr15 14850518 14855994 -
Tsu Tsu02g03339 Chr02 37372255 37378426 +
Vimu Vimu11g01192 Chr11 12909521 12913376 -
Vvi Vvi3g0461 Chr3 3981065 3983504 +
Vvi Vvi3g0462 Chr3 3988607 3989158 +