Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0472 ATGCCATCCCTGCACCCAGAGTTTTTTTCTGACTGGCCTTGGTGTTTTTTGGTAGGTGTCCTTTTAAACTGTGGCTCAACCAAAGATATAGTCACAACGAACCTGAAATTTATTACCGATGAAGGCTTCATTTCCGTTGGCAACTCATCAACCCTTAAAACACCAGATTTGTTTCCAATACTGTCTACATTGAGGTATTTTCCGGACAAGTCGGCTAAGAAGTACTGCTACGTGATTCCGGTGATCAAAGGAGGGAAGTATCTGATAAGAACTACCTACTATTATGGAGGGTTTGATGGAGGGAATGAGCCACCGGTTTTTGAGCAGATCATTGATGGAACCAAGTGGGGCATTGTCAACACGACCGAGGATTATGCAAAGGGGCTCACCTCATACTACGAGATTGTCGTGGCTGCCATGGGGAAGACGCTCAGCGTTTGCCTTGCCAGGAATGGGAAGACGGTTTCGAGTCCATTTATTACAGCTCTGGAGCTGGAGAATATGGAGGCCTCTGTGTATAATTCCACTGATTTTACCAAGTATGCGCTGAACGTTGTTGCTAGACACAGTTTTGGCTCCAACGATGATATCGTTTGCTTTCCAGATGATCCATACAACCGGTTCTGGCAACCATTCATGGATAATAATCCCATTGTTGAGAGCCATTCCAATATAACTTCTTCAGATTTCTGGAACACGCCACCACTAAAGGTGTTTAAGTCAGCAATCACAACAAGCAGAGGAAAAACACTTCAACTCCAGTGGCCTACTGAACCTCTTCCTAGTAGCAAATACTACATTTCACTCTACTTCCAAGATAATCGGACACCAAGCCCATTTAGTTGGAGAGTTTTCAGTGTTTCTGTTAATGGCAAGAACTTTTTCACTAATCTCAATGTTACAACTGATGGTGTGATGGTGTATGGGACACAATGGCCTCTCTCTGGGCTGACTGAGATTGTCATGACTCCTGGGGCTGACATACCCGTTGGGCCTGTGATCAATGCTGGGGAGATCTTTCAGATGCTGCCTCTAGGTGGAAGGACTCTCACTAGGGATGTCATGGGAATGGAAGATTTGGCAAGAGGGTTTAACAACCCTCCTTCAGATTGGAGTGGAGATCCATGCCTGCCTCAAAACAACTCATGGACTGGAGTTACATGTACAACAGGAAAACTCGCTCGAGTTGTTACTTTGAATCTAACAAACTTCGATTTGGCCGGGTCACTATCACCAAGCATAGCCAATTTGACTGGACTTACGCATCTTTGGCTTGGGGGGAACAAACTCTCGGGTCCTATCCCAGAAATGAGCACATTGAATGAGCTACAAACTTTACATTTGGAGGACAATGGCTTTGAAGGATCGTTCCCTCGATCATTAGACCAGGTTACAAGCCTTCAAGAGATTTACGTTCAAAACAACAATCTAAATGGTACTATTCCAGGGACACTACAAAAGAGACTGGGCATAAACCTCAACATTTATATCTGCGGACTCCAAATCAGAGAGAAACTAGCAGTTGAAAGTGTGAATCAACTGTGGGCGTTTTCGATCATCTGA 1563 0.4453 MPSLHPEFFSDWPWCFLVGVLLNCGSTKDIVTTNLKFITDEGFISVGNSSTLKTPDLFPILSTLRYFPDKSAKKYCYVIPVIKGGKYLIRTTYYYGGFDGGNEPPVFEQIIDGTKWGIVNTTEDYAKGLTSYYEIVVAAMGKTLSVCLARNGKTVSSPFITALELENMEASVYNSTDFTKYALNVVARHSFGSNDDIVCFPDDPYNRFWQPFMDNNPIVESHSNITSSDFWNTPPLKVFKSAITTSRGKTLQLQWPTEPLPSSKYYISLYFQDNRTPSPFSWRVFSVSVNGKNFFTNLNVTTDGVMVYGTQWPLSGLTEIVMTPGADIPVGPVINAGEIFQMLPLGGRTLTRDVMGMEDLARGFNNPPSDWSGDPCLPQNNSWTGVTCTTGKLARVVTLNLTNFDLAGSLSPSIANLTGLTHLWLGGNKLSGPIPEMSTLNELQTLHLEDNGFEGSFPRSLDQVTSLQEIYVQNNNLNGTIPGTLQKRLGINLNIYICGLQIREKLAVESVNQLWAFSII* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0472 520 Gene3D - 177 321 - -
Vvi3g0472 520 SUPERFAMILY L domain-like 376 487 - -
Vvi3g0472 520 PANTHER OS07G0107800 PROTEIN-RELATED 438 488 - -
Vvi3g0472 520 Pfam Malectin-like domain 22 342 IPR024788 -
Vvi3g0472 520 Gene3D Ribonuclease Inhibitor 357 507 IPR032675 -
Vvi3g0472 520 FunFam Leucine-rich repeat receptor-like kinase 352 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0472 Vvi-Chr3 4041065 4046927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0472 20 487 Receptor kinase-like Gene Family AT2G37050 30.629 8.97e-57 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0472 - - vvi:100248596 980.319