Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0466 ATGATCAGAACCAGGAACAGGATCAAGCCCAACAGCGCAGTGCGGATTCTGGCATCTGATTTGGACCTCTATGTAGCTGTAATAGATGGGAAGATCATTGTCAAGATTGGGCCTGGGTTTGATGTTGGGAATCTTGTTCCTCAATCCTTCAAAAAAATTGCCACTTCTGGAAAAGATTATTGTTGTATGGGGGAAAAAAATAATCCTGATATGAAAAACCCAGCCCCACCACCAGGGGTGGCTAGGGTTGTGCCCCTTGACATGATCTTGGGGTTAATGTTAGACCGAGACTGGCCCATGAAAGCCCCATCTGTAACCTTTTTTGCCTCTTCCAAGCCCCAAAGTGAAAGGATGAAGGGGACTTCCCCCGTCTCATGCCATGGGCTGACCGTTGTTGAAAAGTCAGATATCCGTGGATTGAATATGATGTTTGTAAGCTGA 441 0.4626 MIRTRNRIKPNSAVRILASDLDLYVAVIDGKIIVKIGPGFDVGNLVPQSFKKIATSGKDYCCMGEKNNPDMKNPAPPPGVARVVPLDMILGLMLDRDWPMKAPSVTFFASSKPQSERMKGTSPVSCHGLTVVEKSDIRGLNMMFVS* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0466 146 Gene3D - 8 64 IPR013780 -
Vvi3g0466 146 SUPERFAMILY Glycosyl hydrolase domain 8 62 - -
Vvi3g0466 146 Pfam Alpha-amylase C-terminal beta-sheet domain 5 61 IPR012850 GO:0004556|GO:0005509|GO:0005975
Vvi3g0466 146 SMART alpha-amyl_c2 4 66 IPR012850 GO:0004556|GO:0005509|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0466 Vvi-Chr3 4017527 4019315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0466 2 66 Glycoside Hydrolase AT4G25000 49.231 6.55e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0466 K01176 - vvi:100250317 112.464