Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0952 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0953 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0954 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0955 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0956 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0957 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0958 Acco11g1337 . . . Adu05g00181 . . . . . . . . . Alju09g1350 . . . . . Arst5g00224 . Bach4g00928 . Bisa11g2041 . . . . . . . Dere09g1312 . . . Enph13g1607 . Glsi05g1099 . . . . . . . . . Lal15g0364 . . . . . Lan18g0806 . . . . . Lapu2g00908 . . . . Lele50g0902 Lele51g0885 Lele52g0882 . . . . . . . . Mepo5g01267 . Mesa17g01366 . Mibi12g1134 . . . . . Phco4g00610 . . . . . Pste1g00335 . Pte14g00745 . . . Pumo8g01507 . Pvu2g1360 . Rops1g01310 . Seca10g01235 . Spst2g01159 . . . . . . . Trre9g01692 . . . Vian10g01018 . Vifa1g05999 . Vimu7g03394 . Viun2g01530 . Vivi2g02513 . . .
Vvi2g0959 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0960 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0961 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal16g1845 . . . . . . . . . . . . . . . . . . . Lja2g0760 . Mal6g0594 . . . . . . . Mtr5g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto6g4128 . Tpr2g1390 . . . Tsu05g01140 . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0952 Chr2 13394692 13395542 -
Vvi Vvi2g0953 Chr2 13400297 13400650 -
Vvi Vvi2g0954 Chr2 13406894 13407178 +
Vvi Vvi2g0955 Chr2 13419847 13425871 +
Vvi Vvi2g0956 Chr2 13456565 13457189 -
Vvi Vvi2g0957 Chr2 13457650 13457904 +
Vvi Vvi2g0958 Chr2 13478823 13525251 +
Acco Acco11g1337 Chr11 27611727 27631455 -
Adu Adu05g00181 Chr05 2024031 2033482 -
Alju Alju09g1350 Chr09 37273077 37284719 -
Arst Arst5g00224 Chr5 2043690 2053668 -
Bach Bach4g00928 Chr4 6221582 6228704 +
Bisa Bisa11g2041 Chr11 43402142 43414678 +
Dere Dere09g1312 Chr09 17080728 17099721 +
Enph Enph13g1607 Chr13 21753822 21769632 +
Glsi Glsi05g1099 Chr05 60824824 60839737 -
Lal Lal15g0364 Chr15 2449601 2462085 +
Lan Lan18g0806 Chr18 13482751 13497517 -
Lapu Lapu2g00908 Chr2 8373371 8389860 -
Lele Lele50g0902 Chr50 5693309 5703460 +
Lele Lele51g0885 Chr51 5442222 5451674 +
Lele Lele52g0882 Chr52 5732606 5742949 +
Mepo Mepo5g01267 Chr5 12894623 12908271 +
Mesa Mesa17g01366 Chr17 17710746 17723755 +
Mibi Mibi12g1134 Chr12 26573163 26585528 -
Phco Phco4g00610 Chr4 4607743 4625237 -
Pste Pste1g00335 Chr1 1186591 1194351 +
Pte Pte14g00745 Chr14 28744849 28753285 +
Pumo Pumo8g01507 Chr8 49660566 49676425 -
Pvu Pvu2g1360 Chr2 26294073 26311824 +
Rops Rops1g01310 Chr1 29469694 29484223 -
Seca Seca10g01235 Chr10 12248021 12261821 +
Spst Spst2g01159 Chr2 10227011 10239508 +
Trre Trre9g01692 Chr9 15007040 15020282 +
Vian Vian10g01018 Chr10 11186070 11199640 +
Vifa Vifa1g05999 Chr1 938522453 938551878 -
Vimu Vimu7g03394 Chr7 28594907 28608466 +
Viun Viun2g01530 Chr2 25455481 25470578 -
Vivi Vivi2g02513 Chr2 115428581 115442899 -
Vvi Vvi2g0959 Chr2 13527224 13528253 -
Vvi Vvi2g0960 Chr2 13595184 13672791 +
Vvi Vvi2g0961 Chr2 13674127 13675656 +
Lal Lal16g1845 Chr16 17505158 17512786 -
Lja Lja2g0760 Chr2 6947651 6949247 -
Mal Mal6g0594 Chr6 7887857 7889288 -
Mtr Mtr5g1138 Chr5 11324888 11326661 -
Sto Sto6g4128 Chr6 44717313 44719267 -
Tpr Tpr2g1390 Chr2 16232692 16234731 -
Tsu Tsu05g01140 Chr05 9995560 9997344 -
Lal Lal16g1845 Chr16 17505158 17512786 -