Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal16g1845 ATGTCTGGACCTCTGTCCCCTAAGACAGCTTTGGAGAAGAGTGACCATGTGGGTTCTTTTAAAAAGAAGGCAATGAGTCTCAGGAATTCTATAACGAGAAGGAGCAGAAGAAGCAGCAGCAAGGTTATGTCTGTTGAAATTGAGGATGTCCGTGATGCTGAGGAGTTGAAGGCTGTTGATGAGTTCCGTCAAGCACTTGTTTTGGATGAGCTACTCCCTGAAAAGCATGATGATTATCATATGATGCTCAGATTCCTCAAGGCCAGAAAATTTGACATTGAGAAATCCAAGCAAATGTGGTCTGACATGCTCCAATGGAGGAAGGAATTTGGTGCTGACACTGTCATAGAGGACTTTGAATTCAAGGAACTGGAAGAAGTGTTGCAATATTATCCTCAAGGAAATCATGGAGTAGATAAGGATGGAAGACCAGTGTACATTGAGAGATTGGGTCAAGTGGATGCTACCAAGCTGATGCAAGTCACAACCATGGATCGCTATGTCAAATATCATGTTCGAGAGTTCGAGAGGACATTCGATGTGAAGTTTGCAGCTTGTTCCATCGCTGCAAAGAAGCACATCGATCAAAGTACAACCATCCTCGATGTTCAAGGAGTGGGACTTAAGAACTTCAACAAACATGCCAGGGAACTTGTCACCCGCCTTCAGAACATTGATGGAAACAATTACCCAGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAATACCATAAAATCCTTCCTTGATCCAAAGACCACAGCAAAAATCCATGTTCTTAGCAACAAGTATCAGAGCAAATTGCTTGAAATAATTGATGCTAGTGAGTTGCCTGAGTTTTTAGGAGGTACTTGCACTTGTGCTGACCAAGGAGGCTGCATGCGTTCTGACAAGGGCCCATGGAAGGATCCAGAAATAATAAGGATGGTTCAGAATGGGGAGCACAAATGCTCAAGAAAATTTGAGCCTCCTGTCCAAGAAGAGAAAACAACTTCAGAGGGAAATCAAACTTCCAATTTAGAGACAACTTTCACTTCACAATTATCTTCTGTTTTTGCTGAGGTTCCTGCTACTAAAGCTTACAACTATGAGGACTTTGTCCCTGCAGCTGATAAATCTGCTTGGAAAAAAGTTGATGATAATGACAAGTTTGCAGTATCAAAAGGTGGAGAAGAAAGTTACAGCAGCATGGCTGATTCATGCAAGATTCATGAGAAAGTGAATTCACAGATATTCACTGGTGTAATGGCTTTTGTGATGGGAATAGTGACCATGGTGAGAATGACAAGAAACATGCCAAAGAAGCTCACTGATGCAAACTTCTACTCCAATAATTCTGTGTATGCTGGTGACCAACAAGTTTCTTCTAACCAAATGACTACTAACCCTGCCATTTCTGCTCAAGAATTTGTCACTGTCATGAAACGCATGGCTGAGTTGGAAGAGAAAATGATCAACATGAACCAGAATCCTTCTATGCCACCAGAGAAGGAGGAAATGTTGAATGCTGCTATAACCAGAGCAGATGCTTTGGAGCAAGAGCTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTTCACAGCAAGAGGAGCTTTCTGCTTATATTGAGAAAAAGAAGAAGAAAAAGAAGTTGTTTGCATGGTAA 1671 0.4177 MSGPLSPKTALEKSDHVGSFKKKAMSLRNSITRRSRRSSSKVMSVEIEDVRDAEELKAVDEFRQALVLDELLPEKHDDYHMMLRFLKARKFDIEKSKQMWSDMLQWRKEFGADTVIEDFEFKELEEVLQYYPQGNHGVDKDGRPVYIERLGQVDATKLMQVTTMDRYVKYHVREFERTFDVKFAACSIAAKKHIDQSTTILDVQGVGLKNFNKHARELVTRLQNIDGNNYPETLNRMFIINAGSGFRMLWNTIKSFLDPKTTAKIHVLSNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDPEIIRMVQNGEHKCSRKFEPPVQEEKTTSEGNQTSNLETTFTSQLSSVFAEVPATKAYNYEDFVPAADKSAWKKVDDNDKFAVSKGGEESYSSMADSCKIHEKVNSQIFTGVMAFVMGIVTMVRMTRNMPKKLTDANFYSNNSVYAGDQQVSSNQMTTNPAISAQEFVTVMKRMAELEEKMINMNQNPSMPPEKEEMLNAAITRADALEQELMATKKALEDSLSQQEELSAYIEKKKKKKKLFAW 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal16g1845 556 Pfam CRAL/TRIO, N-terminal domain 74 102 IPR011074 -
Lal16g1845 556 MobiDBLite consensus disorder prediction 327 346 - -
Lal16g1845 556 SMART sec14_4 123 294 IPR001251 -
Lal16g1845 556 Pfam CRAL/TRIO domain 129 291 IPR001251 -
Lal16g1845 556 PRINTS Cellular retinaldehyde-binding protein signature 81 103 - -
Lal16g1845 556 PRINTS Cellular retinaldehyde-binding protein signature 250 269 - -
Lal16g1845 556 PRINTS Cellular retinaldehyde-binding protein signature 283 292 - -
Lal16g1845 556 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 2 553 - -
Lal16g1845 556 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 2 553 - -
Lal16g1845 556 SUPERFAMILY CRAL/TRIO domain 123 319 IPR036865 -
Lal16g1845 556 Coils Coil 478 498 - -
Lal16g1845 556 SMART CRAL_TRIO_N_2 78 103 IPR011074 -
Lal16g1845 556 SUPERFAMILY CRAL/TRIO N-terminal domain 52 119 IPR036273 -
Lal16g1845 556 CDD SEC14 124 292 IPR001251 -
Lal16g1845 556 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 123 297 IPR001251 -
Lal16g1845 556 Gene3D - 18 110 - -
Lal16g1845 556 Coils Coil 509 540 - -
Lal16g1845 556 Gene3D - 111 322 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal16g1845 Lal-Chr16 17505158 17512786 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal16g1845 57 288 Acyl Lipid Metabolism Gene Families AT5G47730 28.216 8.02e-21 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal16g1845 - - lang:109350159 1021.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g1845 16 17505158 17512786 Lal16g1845 16 17505158 17512786 ECH
Lal16g1845 16 17505158 17512786 Lal23g0246 23 2347441 2354228 LSH