Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi2g0960 ATGGTGGCGTCGAATGTGGTGCACGAGGGATGGATGGTGCGGTACGGACTGAGGAAGATCGGCACATCCTACATCCATATGCGGTATTTCGTGTTGGAGTCGCGTCTGCTTGCTTACTACAAGAGAAAGCCTGTGCAAGATGCGGTTCCGATCAAGACGCTTCTAATTGGTGGGAACTGTAGGGTGGAAGACAGAGGGTTGAAGACTCACCGTGGACATATGGTTTATGTTTTGTCTATTTACAACAAGAAAGAGAAGAACCATCAAATCATGATGGCAGCATTCAATATCCAGGAGGCATTAATCTGGAAAGAAAAAATTGAGGCTGTAATTGATCAGCATCAGGACTCACAAGTTGCAAATGGAAATAAATATATTTCATTTGAATATAAATCTGGGATGGATAATGGAAGGGCTGCTTCCTCATCTGACCATGAAAGTCAGTTTAGTGCAGAGGATGATGAAGAAGATACTCATCGTGCTTTGGTTCGGAGAAAAACAATTGGAAATGATTTTCCTGACTCAGTGTTTGACTGGACTCGAGAAATGGATTCAGAATTGTTAAACCAGGATATCAACAATCAAGCCTTTTCCTCTGATCAAAAAAAAGAAAAAAACAATCAAGCCTTCCCCAAAAAGCATTGGCGTCTTCTCCAATGCCAAAATGGACTTCGAATTTTTGAAGAGCTTCTTGAAGTTGATTACCTTCCAAGGAGCTGTAGTAGAGCAATGAAAGCTGTAGGGGTTGTGAAGGCAACCTGTGAAGAAATATTTGAGCTTGTAATGAGCATGGATGGAACACGGTTTGAGTGGGATTGCAGTTTCCAATATGGCAGCTTAGTGGAGGAGGTAGATGGACATACAGCTATTCTCTATCATAGGCTTCAGCTGGGCTGGTTCCCTATGTTTGTGTGGCCTCGTGACCTTTGCTATGTGCGTTATTGGTGTCGAAATGATGATGGAAGTTATGTTGTGTTATTTCGTTCTAGGGAGCACGAGAACTGTGGTCCGCAACCAGGATGTGTGCGTGCCCATCTTGAAAGTGGGGGATTCATCATTTCCCCTCTAAAACCTCGAAATGGGAGGCCCAGAACACAGGTTCAGCATCTTATGCAAATTGATCTGAAAGGATGGGGCACTGGTTATATTTCATCATTTCAGCAACATTGTGTCCTTCAGATGTTAAATAGTGTTGCTGGACTGCGTGAGTGGTTTTCTCAGACGGATAAAAGGAATGCTCTGCCAAGAATTCCTGTTATGGTCAATATGGCCTCAACTTCTTTTACTTCAGAGAAGAATCAGAAGCCACAGGAGTCTTCTGATCAATTGAATGCTACAAGTAGGAACTCAATGATGATGGATGAATACTCTGATGAAGATGAAGAATTTCAAGCACCCGAGACAGAACAAGAGGCATACTCAATGAGTCTTCCGAATGAAGTCAAAGGAACAGCCATGGAAGAAGAACCCCAAGATAAAATTGATGTCTCATGTTTTTCGGGCAATCTACGACGTGATGACCGTGATAAGGGTCGTGACTGCTGGACGATATCTGATGGGAACAACTTCAGAGTTCGTAGCAAGCATTTTTGTTATGACAAAACGAAGATTCCTGCAGGGAAACATCTTATGGATCTTGTTGCTGTTGATTGGTTCAAAGACTCAAAACGGATCGACCATGTTGCTAGGCGACAAGGCTGTGCAGCACAAGTTGCATCAGAGAAAGGACTTTTCTCTATTGTCATAAACCTGCAAGTACCCGGTTCAACACACTACAGTATGATATTTTATTTTGTAACTAAGGAATTGCTAACTGGATCCCTGTTGCAACGATTTGTTGATGGTTATGATGAGTTCCGAAATAGCAGGCTGAAGCTCATCCCATCAGTTCCCAAGGCTCCATGGATGGTGCGCCGGATTGTTGGAAGCACCCCTCATTTCCTAGGAAAAGTAGTTGATTGCAATTATATCCGTGGTCCAAAGTACTTGGAGATTGATGTTGATTTTGGTTCTTCAACTGTTGTTGATGGAGCTTTGGCCTTTGTAAATGGTGCAATTCCTAACTTGGTTGTTGACATGGCTTTCCTTGTACAGGGAAACACTGAGGATGAGTTGCCGGAGAGGTTGATCGGCGCAGTCCGGGTTTCCCGTGTAGATTTTTCATCAGCTATAGTCCCAAAATTGGACCCATATACATATGCTTGA 2205 0.4313 MVASNVVHEGWMVRYGLRKIGTSYIHMRYFVLESRLLAYYKRKPVQDAVPIKTLLIGGNCRVEDRGLKTHRGHMVYVLSIYNKKEKNHQIMMAAFNIQEALIWKEKIEAVIDQHQDSQVANGNKYISFEYKSGMDNGRAASSSDHESQFSAEDDEEDTHRALVRRKTIGNDFPDSVFDWTREMDSELLNQDINNQAFSSDQKKEKNNQAFPKKHWRLLQCQNGLRIFEELLEVDYLPRSCSRAMKAVGVVKATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLGWFPMFVWPRDLCYVRYWCRNDDGSYVVLFRSREHENCGPQPGCVRAHLESGGFIISPLKPRNGRPRTQVQHLMQIDLKGWGTGYISSFQQHCVLQMLNSVAGLREWFSQTDKRNALPRIPVMVNMASTSFTSEKNQKPQESSDQLNATSRNSMMMDEYSDEDEEFQAPETEQEAYSMSLPNEVKGTAMEEEPQDKIDVSCFSGNLRRDDRDKGRDCWTISDGNNFRVRSKHFCYDKTKIPAGKHLMDLVAVDWFKDSKRIDHVARRQGCAAQVASEKGLFSIVINLQVPGSTHYSMIFYFVTKELLTGSLLQRFVDGYDEFRNSRLKLIPSVPKAPWMVRRIVGSTPHFLGKVVDCNYIRGPKYLEIDVDFGSSTVVDGALAFVNGAIPNLVVDMAFLVQGNTEDELPERLIGAVRVSRVDFSSAIVPKLDPYTYA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi2g0960 734 SUPERFAMILY Bet v1-like 207 395 - -
Vvi2g0960 734 SUPERFAMILY PH domain-like 4 117 - -
Vvi2g0960 734 MobiDBLite consensus disorder prediction 427 448 - -
Vvi2g0960 734 Pfam START domain 241 380 IPR002913 GO:0008289
Vvi2g0960 734 SMART PH_update 6 114 IPR001849 -
Vvi2g0960 734 CDD PH 8 107 - -
Vvi2g0960 734 ProSiteProfiles PH domain profile. 5 112 IPR001849 -
Vvi2g0960 734 Gene3D - 215 414 IPR023393 -
Vvi2g0960 734 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 515 719 IPR009769 -
Vvi2g0960 734 Gene3D - 2 122 IPR011993 -
Vvi2g0960 734 CDD START 200 378 - -
Vvi2g0960 734 MobiDBLite consensus disorder prediction 136 158 - -
Vvi2g0960 734 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 22 728 IPR045096 -
Vvi2g0960 734 SMART START_1 194 407 IPR002913 GO:0008289
Vvi2g0960 734 ProSiteProfiles START domain profile. 215 377 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi2g0960 Vvi-Chr2 13595184 13672791 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi2g0960 - - vvi:100241468 1501.11