Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi2g0942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0946 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0948 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0949 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0950 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi2g0951 Acco11g1339 . . . Adu05g00182 . . . . . . . . . Alju09g1352 . . . . . Arst5g00226 . Bach4g00927 . Bisa11g2039 . . . . . . . Dere09g1311 . . . Enph13g1606 . Glsi05g1100 . . . . . . . . . . . . . . . . . . . . . . . Lasa2g03692 . Lele49g0867 Lele50g0901 Lele51g0884 Lele52g0881 . . . . . . . . Mepo5g01266 . Mesa17g01364 . Mibi12g1136 . . . Phac2g02101 . Phco4g00612 . Prci10g1396 . . . Pste1g00313 . . . . . Pumo8g01509 . Pvu2g1359 . Rops1g01314 . Seca12g03262 . Spst2g01157 . . . . . . . Trre9g01690 . . . Vian10g01017 . Vifa1g06006 . Vimu7g03393 . Viun2g01532 . Vivi2g02518 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi2g0942 Chr2 13151987 13152881 +
Vvi Vvi2g0943 Chr2 13170362 13170724 +
Vvi Vvi2g0944 Chr2 13170779 13171363 -
Vvi Vvi2g0945 Chr2 13196758 13199766 -
Vvi Vvi2g0946 Chr2 13229560 13230324 -
Vvi Vvi2g0947 Chr2 13235398 13237513 +
Vvi Vvi2g0948 Chr2 13241463 13241798 +
Vvi Vvi2g0949 Chr2 13284096 13286125 +
Vvi Vvi2g0950 Chr2 13345788 13348119 +
Vvi Vvi2g0951 Chr2 13348164 13348478 +
Acco Acco11g1339 Chr11 27646804 27648540 +
Adu Adu05g00182 Chr05 2041692 2043287 +
Alju Alju09g1352 Chr09 37300058 37301900 +
Arst Arst5g00226 Chr5 2060098 2063102 +
Bach Bach4g00927 Chr4 6214801 6218108 -
Bisa Bisa11g2039 Chr11 43391993 43393876 -
Dere Dere09g1311 Chr09 17062913 17064771 -
Enph Enph13g1606 Chr13 21741755 21745007 -
Glsi Glsi05g1100 Chr05 60841052 60842890 +
Lasa Lasa2g03692 Chr2 548071039 548072862 -
Lele Lele49g0867 Chr49 5366579 5368439 -
Lele Lele50g0901 Chr50 5671967 5673953 -
Lele Lele51g0884 Chr51 5431258 5432873 -
Lele Lele52g0881 Chr52 5723780 5725806 -
Mepo Mepo5g01266 Chr5 12871030 12874806 -
Mesa Mesa17g01364 Chr17 17691322 17693795 -
Mibi Mibi12g1136 Chr12 26600736 26602497 +
Phac Phac2g02101 Chr2 22883352 22886663 -
Phco Phco4g00612 Chr4 4631722 4633655 +
Prci Prci10g1396 Chr10 9303975 9307189 -
Pste Pste1g00313 Chr1 1134172 1138003 -
Pumo Pumo8g01509 Chr8 49691924 49694245 +
Pvu Pvu2g1359 Chr2 26284778 26288236 -
Rops Rops1g01314 Chr1 29585957 29589853 +
Seca Seca12g03262 Chr12 67078108 67080501 -
Spst Spst2g01157 Chr2 10219934 10222133 -
Trre Trre9g01690 Chr9 14984085 14986351 -
Vian Vian10g01017 Chr10 11177248 11179355 -
Vifa Vifa1g06006 Chr1 939521163 939522436 +
Vimu Vimu7g03393 Chr7 28580258 28580668 -
Viun Viun2g01532 Chr2 25474952 25478462 +
Vivi Vivi2g02518 Chr2 115507142 115510499 +