Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05999 ATGACGTCTAAGGTCGTGTATGAAGGGTGGATGGTGAGGTATGGCCGGCGGAAAATCGGGCGATCGTTCATTCACATGCGGTACTTTGTGTTGGAATCGCGGTTACTTGCTTATTACAAGAGAAAACCGCAGGATAATCAGGTTCCTATTAAGACACTGCTAATTGATGGCAACTGTAGAGTGGAGGATAGAGGCTTGAAGACCCATCATGGACATATGGTATATGTTTTGTCTGTTTACAACAAGAAAGAAAAGAACCAGCGGGTTATGCAGATGGCTGCTTTTAACATCCAAGAGGCCCTAGTTTGGAAGGAAAAAATTGAGTATGTCATTGATCAGCATCAGGGGGCACAGCCATCAAATGGTAACAAATATATTTCTTTTGAATACAAATCTGGGATGGACAACGGGAAGACAGCTTCTTCCTCTGATCGTGAAAGCCAGTTTAGTGCTCAGGAGGATGAAGATGAGCCTTCTTCAAATTTGTTAAGGAGGACAACGATTGGAAATGGTCCAATTTGGCCTCCGGAATCAATTTTTGACTGGACACGAGAGATAGATTCAGATTTGTCAAATCAGAATGCCAATAACCAAGTTTTTTCAAGGAAGCATTGGCGACTGTTGGAATGCCAAAATGGACTTCGAACTTTTGAAGAACTTCTTGAAGTTGATTACCTTCCAAGGAGCTATAGTAGAGCGATGAAGGCAGTGGGTGTTGTGGAAGCCTCTTGTGAAGAAATTTTTGAGCTTGTGATGAGCATGGACGGGACTCGGTTTGAATGGGATTGCAGTTTCCAGGAAGGTAGGTTAGTTGAGGAGGTGGATGGGCATACAGCAATTCTTTATCACCGACTTCAGTTGGACTGGTTCCCAATGTTTGTCTGGCCCCGTGATCTTTGTTATGTACGATACTGGCGTCGAAATGATGACGGAAGTTATGTTGTTTTATTTCGCTCTAGAGAACACTACAACTGTGGTCCACAACCAGGGTGTGTCCGGGCACATATTGAGAGTGGAGGATATAACATCTCCCCTTTAAAGCCTAGGAATGGGAGGCCCAGGACTCAAGTTCAGCATCTTATGCAGATTGATCTGAAGGGTTGGGGTGTGAGTTATATACCGTCTTTCCAGCTGCATTGTCTACGCCAACTGTTAAATAGTGTAGCTGGTTTACGTGAATGGTTTGCCCAGTCAGATGAAAGGAATGCTCCTCCAAGAATTCCTGTCATGGTTAATATGTTCTCAACATCTGCTTCTTCAAAGAAGAGTCAGAAAACAAATGATATTTCTGTAAATTCTACTTCTCTCGATCAAAATGCTGCACACAGAAATTCTGCTCTACTGGATGAATATTCCGATGAAGATGAGGATTTTCAAATAGCAGAACCAGAGCAAGAGGCGTTCCAAATTGGCCGTGAGAGTGATGTTAGAAAAACAGAAGCCTTGGATGAAGAGCCTGATGATGAGATCGACTTATCTTCCTTTTCGGGTAACTTACGCCGTGATGATCGTGATAATGCTCGGGATTGCTGGAAGATATCAGATGGAAATGACTTTAGAGTCAGAAGCAAGAATTTTTGCTATGACAAGTCAAAGGTTCCTGCAGGAAAACATCTGCTGGATCTTGTTGCTGTTGACTGGTTTAAGGACTCAAAAAGAATGGATCACGTGGCTAGGCGTCATGGTTGTGCAGCACAAGTTGCGTCTGAAAAGGGATTTTTCTCCATTATCATTAATCTTCAGGTGCCAGCTTCATCACATTACAGTATGGTATTTTATTTTGTGACCAAGGCGTTAGTTCCTGGAACACTCTTGCAACGCTTTGTTGACGGTGATGATGAATTTCGAAACAGCAGGTTGAAGCTCATCCCATCAGTCCCAAAGGGCTCATGGATTGTACGCCAAAGTGTTGGAAGCACTCCTTGTTTACTGGGAAAGGCAGTTGATTGCAACTATATTCGTGGTCCGAAGTATTTAGAAATTGATGTTGATATCGGTTCTTCTACTGTTGCTAATGGAGTTTTAGGGTTGGTTATTGGTGTGATTACAACACTGGTGGTTGATATGGCGTTTCTTGTACAGGCAAATAGTTCAGATGAGTTGCCCGAGAGACTTATTGGAGCTGTTCGAGTTTCTCATTTAGAACTCAAATCTGCCATAGTCCCAAAATTGGATCAAGATCCATTATGA 2190 0.4283 MTSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKRKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKNQRVMQMAAFNIQEALVWKEKIEYVIDQHQGAQPSNGNKYISFEYKSGMDNGKTASSSDRESQFSAQEDEDEPSSNLLRRTTIGNGPIWPPESIFDWTREIDSDLSNQNANNQVFSRKHWRLLECQNGLRTFEELLEVDYLPRSYSRAMKAVGVVEASCEEIFELVMSMDGTRFEWDCSFQEGRLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHYNCGPQPGCVRAHIESGGYNISPLKPRNGRPRTQVQHLMQIDLKGWGVSYIPSFQLHCLRQLLNSVAGLREWFAQSDERNAPPRIPVMVNMFSTSASSKKSQKTNDISVNSTSLDQNAAHRNSALLDEYSDEDEDFQIAEPEQEAFQIGRESDVRKTEALDEEPDDEIDLSSFSGNLRRDDRDNARDCWKISDGNDFRVRSKNFCYDKSKVPAGKHLLDLVAVDWFKDSKRMDHVARRHGCAAQVASEKGFFSIIINLQVPASSHYSMVFYFVTKALVPGTLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEIDVDIGSSTVANGVLGLVIGVITTLVVDMAFLVQANSSDELPERLIGAVRVSHLELKSAIVPKLDQDPL 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05999 729 ProSiteProfiles PH domain profile. 4 112 IPR001849 -
Vifa1g05999 729 Gene3D - 1 121 IPR011993 -
Vifa1g05999 729 SMART PH_update 5 114 IPR001849 -
Vifa1g05999 729 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 511 714 IPR009769 -
Vifa1g05999 729 Pfam START domain 230 373 IPR002913 GO:0008289
Vifa1g05999 729 SMART START_1 185 397 IPR002913 GO:0008289
Vifa1g05999 729 SUPERFAMILY PH domain-like 4 116 - -
Vifa1g05999 729 CDD PH 7 87 - -
Vifa1g05999 729 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 21 724 IPR045096 -
Vifa1g05999 729 SUPERFAMILY Bet v1-like 189 369 - -
Vifa1g05999 729 MobiDBLite consensus disorder prediction 470 496 - -
Vifa1g05999 729 MobiDBLite consensus disorder prediction 136 170 - -
Vifa1g05999 729 Gene3D - 205 405 IPR023393 -
Vifa1g05999 729 ProSiteProfiles START domain profile. 205 387 IPR002913 GO:0008289
Vifa1g05999 729 MobiDBLite consensus disorder prediction 416 436 - -
Vifa1g05999 729 CDD START 197 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05999 Vifa-Chr1 938522453 938551878 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05999 - - gmx:100806401 1320.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05999 1 938522453 938551878 Vifa1g05999 1 938522453 938551878 ECH