Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0451 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco2g00515 . . . . . . . Ssu5g0501 . . . . . . Vimu1g02706 . . .
Pvu1g0452 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g00495 . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu1g02703 . . .
Pvu1g0453 . . . . Aev07g1271 . . . . . . . Arst10g02450 . . . . Cca05g00453 . . . . Gma17g02096 Gma14g00980 Gso14g0920 Gso17g1859 . . . Lan10g0062 . . . . . . . . . . . . . . . Phco2g00516 . . Pste8g00251 Pumo9g00545 Rops9g02002 Seca8g03331 Spst8g01837 Ssu5g0502 . . . . Vian7g00495 . Vimu1g02700 Viun8g00662 . .
Pvu1g0454 . . . Aed6g1222 . . . . . . . . Arst10g02464 . . . . Cca05g00454 . . . . Gma17g02094 Gma14g00983 Gso14g0923 Gso17g1858 . . . Lan10g0061 . . . . . . . . . . . . . . . Phco2g00517 . . Pste8g00241 Pumo9g00547 . Seca8g03332 Spst8g01836 Ssu5g0503 . . . . Vian7g00493 . Vimu1g02698 Viun8g00663 . .
Pvu1g0455 . . . . . . . . . . . . Arst10g02466 . . . . Cca05g00455 . . . . Gma17g02093 Gma14g00984 Gso14g0925 Gso17g1857 . . . . . . . . . . . . . . . . . . . . . . Pste8g00234 Pumo9g00549 . Seca8g03335 Spst8g01477 Ssu5g0504 . . . . Vian7g00492 . Vimu1g02695 Viun8g00668 Vivi3g01549 .
Pvu1g0456 . . . . Aev07g1268 . . . . . Amo06g2796 . Arst10g02468 . . . . Cca05g00457 . . . . Gma17g02091 Gma14g00991 Gso14g0928 Gso17g1855 . . . . . . . . . . . . . . . . . . . Phco2g00520 . . Pste8g00228 Pumo9g00552 . Seca8g03337 . Ssu5g0506 . . . . Vian7g00490 . Vimu1g02693 Viun8g00670 . .
Pvu1g0457 . . . . Aev07g1267 . . . . . Amo06g2798 . . . . . . Cca05g00458 . . . . . Gma14g00992 Gso14g0929 Gso17g1854 . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu5g0507 . . . . . . . . . .
Pvu1g0458 . . . . . . . . . . . . . . . . . . . . . . . Gma14g00996 . . . . . . . . . . . . . . . . . . . . . Phco2g00522 . . . . . . . . . . . . . . . . . .
Pvu1g0459 . . . . Aev07g1266 . . . . . . . . . . . . Cca05g00462 . . . . Gma17g02090 . Gso14g0933 Gso17g1852 . . . Lan10g0059 . . . . . . . . . . . . . . . . . . . . . . . Ssu5g0509 . . . . . . . . . .
Pvu1g0460 . . . . . . . . . . . . . . . . . Cca05g00463 . . . . Gma17g02089 . . Gso17g1851 . . . Lan10g0058 . . . . . . . . . . . . . . . Phco2g00524 . . Pste8g00211 Pumo9g00554 . Seca8g03341 Spst8g01482 Ssu5g0511 . . . . Vian7g00486 . Vimu1g02688 Viun8g00678 . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0451 Chr1 4638364 4638975 +
Phco Phco2g00515 Chr2 4760222 4761394 +
Ssu Ssu5g0501 Chr5 10598680 10599810 +
Vimu Vimu1g02706 Chr1 39069724 39070630 -
Pvu Pvu1g0452 Chr1 4650331 4651518 +
Lasa Lasa6g00495 Chr6 15401026 15402027 -
Vimu Vimu1g02703 Chr1 39044060 39044966 -
Pvu Pvu1g0453 Chr1 4680371 4681060 +
Aev Aev07g1271 Chr07 11387264 11388037 -
Arst Arst10g02450 Chr10 86215777 86216914 +
Cca Cca05g00453 Chr05 9881595 9882520 +
Gma Gma17g02096 Chr17 38314074 38314844 -
Gma Gma14g00980 Chr14 11544708 11545472 +
Gso Gso14g0920 Chr14 11469087 11470195 +
Gso Gso17g1859 Chr17 37352720 37353807 -
Lan Lan10g0062 Chr10 349395 350442 -
Phco Phco2g00516 Chr2 4788816 4789532 +
Pste Pste8g00251 Chr8 1384039 1384764 -
Pumo Pumo9g00545 Chr9 9132142 9132915 +
Rops Rops9g02002 Chr9 36950665 36952001 +
Seca Seca8g03331 Chr8 95467911 95469114 +
Spst Spst8g01837 Chr8 22242632 22243339 -
Ssu Ssu5g0502 Chr5 10725953 10726672 +
Vian Vian7g00495 Chr7 12251830 12252558 -
Vimu Vimu1g02700 Chr1 38968437 38969748 -
Viun Viun8g00662 Chr8 5269916 5270790 +
Pvu Pvu1g0454 Chr1 4688377 4693508 -
Aed Aed6g1222 Chr6 16966073 16972353 -
Arst Arst10g02464 Chr10 86513053 86517945 -
Cca Cca05g00454 Chr05 9907133 9909691 -
Gma Gma17g02094 Chr17 38290737 38296363 +
Gma Gma14g00983 Chr14 11658183 11664030 -
Gso Gso14g0923 Chr14 11577488 11583419 -
Gso Gso17g1858 Chr17 37333298 37338956 +
Lan Lan10g0061 Chr10 343315 348049 +
Phco Phco2g00517 Chr2 4794534 4802413 -
Pste Pste8g00241 Chr8 1340656 1344813 +
Pumo Pumo9g00547 Chr9 9157475 9158534 -
Seca Seca8g03332 Chr8 95529287 95534949 -
Spst Spst8g01836 Chr8 22226295 22233558 +
Ssu Ssu5g0503 Chr5 10755546 10758192 -
Vian Vian7g00493 Chr7 12236172 12239481 +
Vimu Vimu1g02698 Chr1 38948143 38951401 +
Viun Viun8g00663 Chr8 5282473 5287523 -
Pvu Pvu1g0455 Chr1 4721148 4722442 +
Arst Arst10g02466 Chr10 86616238 86617533 +
Cca Cca05g00455 Chr05 9958882 9960399 +
Gma Gma17g02093 Chr17 38275192 38277023 -
Gma Gma14g00984 Chr14 11750817 11752048 +
Gso Gso14g0925 Chr14 11668785 11670584 +
Gso Gso17g1857 Chr17 37317837 37319615 -
Pste Pste8g00234 Chr8 1293139 1294770 -
Pumo Pumo9g00549 Chr9 9193674 9195619 +
Seca Seca8g03335 Chr8 95636192 95636614 +
Spst Spst8g01477 Chr8 14684810 14685241 +
Ssu Ssu5g0504 Chr5 10837440 10837886 +
Vian Vian7g00492 Chr7 12181483 12218575 -
Vimu Vimu1g02695 Chr1 38902548 38903841 -
Viun Viun8g00668 Chr8 5365885 5367285 +
Vivi Vivi3g01549 Chr3 25497418 25498292 +
Pvu Pvu1g0456 Chr1 4737053 4746046 -
Aev Aev07g1268 Chr07 11347333 11352690 +
Amo Amo06g2796 Chr06 92793748 92799539 -
Arst Arst10g02468 Chr10 86629573 86633778 -
Cca Cca05g00457 Chr05 9999599 10008146 -
Gma Gma17g02091 Chr17 38240133 38260340 +
Gma Gma14g00991 Chr14 11787246 11799055 -
Gso Gso14g0928 Chr14 11703643 11716094 -
Gso Gso17g1855 Chr17 37296511 37303097 +
Phco Phco2g00520 Chr2 4847408 4854945 -
Pste Pste8g00228 Chr8 1260455 1269796 +
Pumo Pumo9g00552 Chr9 9208131 9215977 -
Seca Seca8g03337 Chr8 95685861 95706277 -
Ssu Ssu5g0506 Chr5 10854638 10863170 -
Vian Vian7g00490 Chr7 12160931 12169545 +
Vimu Vimu1g02693 Chr1 38860191 38871622 +
Viun Viun8g00670 Chr8 5382617 5393130 -
Pvu Pvu1g0457 Chr1 4748584 4751285 -
Aev Aev07g1267 Chr07 11341315 11345035 +
Amo Amo06g2798 Chr06 92808043 92810333 -
Cca Cca05g00458 Chr05 10030842 10033755 -
Gma Gma14g00992 Chr14 11808614 11811081 -
Gso Gso14g0929 Chr14 11725300 11728254 -
Gso Gso17g1854 Chr17 37290478 37293425 +
Ssu Ssu5g0507 Chr5 10880009 10882217 -
Pvu Pvu1g0458 Chr1 4760395 4761165 -
Gma Gma14g00996 Chr14 11955335 11972921 -
Phco Phco2g00522 Chr2 4879999 4880766 -
Pvu Pvu1g0459 Chr1 4762232 4766786 -
Aev Aev07g1266 Chr07 11292514 11309455 +
Cca Cca05g00462 Chr05 10085573 10094940 -
Gma Gma17g02090 Chr17 38205906 38211945 +
Gso Gso14g0933 Chr14 11876254 11889337 -
Gso Gso17g1852 Chr17 37251281 37255944 +
Lan Lan10g0059 Chr10 332285 336977 +
Ssu Ssu5g0509 Chr5 10896631 10901410 -
Pvu Pvu1g0460 Chr1 4772363 4781592 +
Cca Cca05g00463 Chr05 10115343 10122511 +
Gma Gma17g02089 Chr17 38190822 38197392 -
Gso Gso17g1851 Chr17 37235841 37242408 -
Lan Lan10g0058 Chr10 326875 331372 -
Phco Phco2g00524 Chr2 4895470 4905631 +
Pste Pste8g00211 Chr8 1187888 1194068 -
Pumo Pumo9g00554 Chr9 9264626 9271496 +
Seca Seca8g03341 Chr8 95857830 95865223 +
Spst Spst8g01482 Chr8 14990085 14996431 +
Ssu Ssu5g0511 Chr5 10921744 10933993 +
Vian Vian7g00486 Chr7 12111682 12118300 -
Vimu Vimu1g02688 Chr1 38806638 38820191 -
Viun Viun8g00678 Chr8 5437293 5444430 +
Aev Aev07g1266 Chr07 11292514 11309455 +
Lan Lan10g0058 Chr10 326875 331372 -
Arst Arst10g02466 Chr10 86616238 86617533 +
Vivi Vivi3g01549 Chr3 25497418 25498292 +
Arst Arst10g02464 Chr10 86513053 86517945 -
Arst Arst10g02450 Chr10 86215777 86216914 +