Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02698 ATGAGCTTATCCAAGAAAGTATCCCAAACAGACGCTAATTTGAGCACCCCAAACAAAGCAACCTCTTTGAATCCAAATGCAGCAGAGTTTGTTCCATACTCCCTGAGATCATCTCCATCTGGAAGCACTAGCTCAGTGGATGCAACAGTGAGGTTTACTACTACCGCTGGATCTCTTGGTAAAGCAGTTTTAGATCGATCAGAATCATCCATTTCGAACAATTCTGATGATGAGGCTCACCAGTACTGGCGTTGTCAGCTGCCTGATGATATCACTCCTGACTTCAAGGTCATGGGAGAAGATGAATCCCAAGGTGTTAACAACCTCTCTTTAGCAGGCTTATCTATAAATAATGATAATGAATCCTCAATATTTCCTTCTTCTAAGGGAAGTAGATATATGTTAAATGAGCTGCAGGAATTGTCTCAACAACACCTTAATGGCAATACTTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGAGGAACCATCTTCACCATGCCTTTTGAACACTTCAGCAAAGCCTTGGGATAGGCAAATTGGGAAGACGGATTTGCATCTTAGCAATGGTCAAGAGGCACTTGTTTATGATGACAACTCTGGAAATAGATTCTTAAATGATGGTTTTACTGGGAATAATCTTTTGAATGATACTGATTTGAACCCTTTGGAGTTTTTAGCTTCTCTTTTTCCTGGGTTTGCTTCAGAAAGCCTTGCTGAAGTTTTCTTTGCCAATGAATGTGATTTACATCTGACCATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGATGGTAGTAGCATCACTCAGAATATGAGTCCAAAGACTGTGTCAGCTCCCAATCTGAGTGCAATGGAATTTCCAGCTCTTACTTCATCAAATGGTCAGAGTACTGCAAAATATGCTGCAGATAGTGTTCAAAGTGGCAATCCTTACTTATCATCTGATAAAGACATGCTAATGTTCAAATTTAGCTCTTCTATTCCATCTAGAGGAGCTGTCGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTACATGGAAGTATGATAAAAATGGTTCTGGTGATGCTTCCACGGGCTCTAGTAGAAGTTTAAATGTTCTCGCAAGTGCCTACAATGGTGGACAAGGGAGAGCCAACTTTAGTGATAGATTACAGAACAGCGGTTCTGCTCGGGGAGCTCCTGTTTGGCTTGAAACTGGTGACGCAGTTGCAAATATGTATTCTGAACTGCGGGAGGAGGCTCGTGATCATGCACGCTTGCGTAATGCTTATTTTGAGCAGGCACGACAAGCCTACCTTGTTGGCAACAAAGCCCTTGCAAAGGAGCTAAGTGTTAAAGGGCAACTTCACAACATGCATATGAAAGCTGCACATGGAAAAGCTCAAGAATCTATTTACCGTCAGAGGAACCCTGTTGCTCCAGAGATGCAAGGTAATGGGAGGGGGCACCAGAGAATGATAGACCTTCATGGTCTGCATGTAAGTGAGGCTATTCACGTGCTGAAACATGAACTGAGTGTGCTTAGAAGCACGGCCAGAGCCGCCGAGCAGCGTCTACAGGTTTACATCTGTGTTGGCACCGGCCACCACACCCGGGGCTCACGCACTCCGGCGAGACTTCCGATAGCTGTACAGCGATATCTACTGGAAGAAGAAGGCCTTGATTTCACGGAACCGCAGCCGGGTCTGATTAGGGTGGTGATATACTGA 1734 0.4394 MSLSKKVSQTDANLSTPNKATSLNPNAAEFVPYSLRSSPSGSTSSVDATVRFTTTAGSLGKAVLDRSESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDESQGVNNLSLAGLSINNDNESSIFPSSKGSRYMLNELQELSQQHLNGNTFADKLRFSNSTYREEPSSPCLLNTSAKPWDRQIGKTDLHLSNGQEALVYDDNSGNRFLNDGFTGNNLLNDTDLNPLEFLASLFPGFASESLAEVFFANECDLHLTIEMLTQLEIQVDGSSITQNMSPKTVSAPNLSAMEFPALTSSNGQSTAKYAADSVQSGNPYLSSDKDMLMFKFSSSIPSRGAVDFASAVRKLASQDSGTWKYDKNGSGDASTGSSRSLNVLASAYNGGQGRANFSDRLQNSGSARGAPVWLETGDAVANMYSELREEARDHARLRNAYFEQARQAYLVGNKALAKELSVKGQLHNMHMKAAHGKAQESIYRQRNPVAPEMQGNGRGHQRMIDLHGLHVSEAIHVLKHELSVLRSTARAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRYLLEEEGLDFTEPQPGLIRVVIY 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02698 577 SMART SMR_2 492 577 IPR002625 -
Vimu1g02698 577 Pfam Smr domain 495 563 IPR002625 -
Vimu1g02698 577 Gene3D - 462 576 IPR036063 -
Vimu1g02698 577 MobiDBLite consensus disorder prediction 1 27 - -
Vimu1g02698 577 ProSiteProfiles Smr domain profile. 495 577 IPR002625 -
Vimu1g02698 577 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 577 - -
Vimu1g02698 577 CDD CUE_CID7_like 223 265 IPR041806 -
Vimu1g02698 577 Coils Coil 506 526 - -
Vimu1g02698 577 SMART DUF1771_2 414 479 IPR013899 -
Vimu1g02698 577 SUPERFAMILY SMR domain-like 493 575 IPR036063 -
Vimu1g02698 577 Pfam Domain of unknown function (DUF1771) 415 478 IPR013899 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02698 Vimu-Chr1 38948143 38951401 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02698 - - gmx:100796128 982.245