Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g0503 ATGAGCTTATCCAAGAAAGGATCCCAAACAGACGCGAAACTGAGCACCTCAAACAAAGCAACCTCCTTGAACCCAAATGCTGCGGAGTTTGTTCCTTTTGCCCTCCGATCATCGCCATCTGGAAGCACCAGCTCTGTAGATGCAACAGCCAGGTTTACTACTGCTGGATCTCTTGGGAAAGCAGTTTTAGATCGATCAGAATCGTCCATTTCGAATAATTCTGATGATGAGGCTCATCAGTACTGGCGTTGTCAGCTTCCTGATGATATCACGCCTGACTTCAAGGTCATGGGAGAAGATGAATCCCAAGGTCTTAACAACCTCTCTTTAGCAGGCTTATCtataaatgatgataatgaatCCTCAATGTTTCCTTCCAAGGGAAGTAGATATATGTTAAATGAGCAGCAGGAATTGTCTCAACAGCACCTTAATGGCAATACTTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGAGGAACCATCTTCTGCAAGCATTTTAAACTCATCAGCAAAGCCTTGGGATAGGCAAATTGGGAATACTGACTTGCATGTTAGCAGTGGTCAAGAGGCACTTGTTTATGATGACAACTCTGGACATGGATTCTTAAATGATGTTTTCGCTGGGAATGCTCTTGTGAATGATACTGATTTGAACCCTTTGGAGTTTTTACCAGCTTTATTCCCTGGTTTTGCTTCAGAAAGCCTTGCTGAAGTTTTCTTTGCCAATGGATGTGATGTACATCTTACCATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGATGGTAGCTTCAATCAGAATCTGAGTCCAAAGACTCTGTCAGCTCCCAATCTGAGTGCAATGGACTTCCCAGCACTTACTTCATCAAATGGCCAGAATACTTCTGCAAAATATGCTGCAGATAATGTTCAACAAGGTGGCAATCCGTACTTATCGTCTGATAAAGACATGCTCATGGTCAAATCTGGCTCTTCTATTCCATCTAGAGGTGCTGTTGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAAAAATGGTTCTGGTGATGCTTCTAGTGGCTCAAGTAGGGGTTTAAATGTTCTGGCTAGTGCCTACAATGGTGGACAGGGGAGAGTCAACTTTGGTGATAGATTACAGAACCGTGGTTCTGCTCGGGCAGCTCCTGTTTGGCTTGAAACCGGTGATGCAGttgCAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGCGTGCGTAATGCATATTTTGAGCAGGCACGACAAGCCTATCTTGTTGGCAACAAGGCCCTTGCAAAGGAGCTAAGTGTTAAAGGGCAACTGCACAACATGCATATGAAAGCAGCTCATGGAAAAGCTCAAGAATCTATTTACCGCCAGAGGTTTGTTGTTCCCCACTTCTATCACTCTTCCTATCCCTGCGACTTATGGTAA 1479 0.4341 MSLSKKGSQTDAKLSTSNKATSLNPNAAEFVPFALRSSPSGSTSSVDATARFTTAGSLGKAVLDRSESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDESQGLNNLSLAGLSINDDNESSMFPSKGSRYMLNEQQELSQQHLNGNTFADKLRFSNSTYREEPSSASILNSSAKPWDRQIGNTDLHVSSGQEALVYDDNSGHGFLNDVFAGNALVNDTDLNPLEFLPALFPGFASESLAEVFFANGCDVHLTIEMLTQLEIQVDGSFNQNLSPKTLSAPNLSAMDFPALTSSNGQNTSAKYAADNVQQGGNPYLSSDKDMLMVKSGSSIPSRGAVDFASAVRKLASQDSGIWKYDKNGSGDASSGSSRGLNVLASAYNGGQGRVNFGDRLQNRGSARAAPVWLETGDAVANMYSELREEARDHARVRNAYFEQARQAYLVGNKALAKELSVKGQLHNMHMKAAHGKAQESIYRQRFVVPHFYHSSYPCDLW 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g0503 492 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 477 - -
Ssu5g0503 492 Pfam Domain of unknown function (DUF1771) 414 476 IPR013899 -
Ssu5g0503 492 CDD CUE_CID7_like 221 263 IPR041806 -
Ssu5g0503 492 SMART DUF1771_2 413 478 IPR013899 -
Ssu5g0503 492 MobiDBLite consensus disorder prediction 1 21 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g0503 Ssu-Chr5 10755546 10758192 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g0503 - - gmx:100799961 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0503 5 10755546 10758192 Ssu5g0503 5 10755546 10758192 ECH