Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g00524 ATGTCGTCGGTTTACGTTCTAGAACCTCCGACGAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGGCCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCGAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTATGACAACACCATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGCCGGCGATCCCACCGCCTCCGGCACCGGAGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTGGCGATGGCAAGTTCTGGATCTCCAAATTCCAATGGAAGTCAGTTTTTCATCACTCTCGATCGATGTGACTGGCTTGATCACAAGCATACAATTTTTGGAAAAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCAAAGATTTTATCAGTTGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCGAACTGAAGCTAGAGTTGATGCTGAAAGTAAAGAGCAGAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCATCGGTGAAGCAAAAAATTAAGAGCAGTCATGATGTCTTGAATGATCCTCGTCTTCTAAAGGAAGAAACACCTGATAGTGAACTGAGTTCGTCAAGAAGAGATCTGCAGTTGTCTGTTAGGGAGACTCTTAACTCAAAGAAAGAAGACCCTCAGAAAGATTCAGCACCTGGTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGCGGAAGGAGTTGGGTGATCTCCCTCCAAAGCCCAAGTTGCGAAAAGGAGGAAGGTCGATTCCAGAGAATCATGATACGTCAGCACCAAGGTCCAATGCTGTCAGTGCTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTAGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTACAGAAGCAGAAGAAACGCCGACTTCAGGGGCGGGAAGATGAAGTTCTGGCTAAACTTCAAAAATTTAAGAATTCTTTAGCAGCAAAGGAGACACCCCCTGCTGGCGAATCTGTAGATGTTAATAGTGAGTTGTCTGACTGGAAAGGTGTCAGTTTAAAATTTGACCCCGAGTCTGGCAAGGACCGCATGTCACGCAATGAGGACCCGAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGGAAAGAGAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1476 0.4472 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQAGDPTASGTGGESIYGGVFADEFHSRLKFKHRGIVAMASSGSPNSNGSQFFITLDRCDWLDHKHTIFGKVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTEARVDAESKEQKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETPDSELSSSRRDLQLSVRETLNSKKEDPQKDSAPGNIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLRKGGRSIPENHDTSAPRSNAVSADEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSLAAKETPPAGESVDVNSELSDWKGVSLKFDPESGKDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g00524 491 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 167 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 MobiDBLite consensus disorder prediction 260 275 - -
Phco2g00524 491 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 167 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 MobiDBLite consensus disorder prediction 235 250 - -
Phco2g00524 491 CDD cyclophilin_CeCYP16-like 8 179 - -
Phco2g00524 491 MobiDBLite consensus disorder prediction 283 325 - -
Phco2g00524 491 Coils Coil 206 233 - -
Phco2g00524 491 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 218 IPR044666 -
Phco2g00524 491 FunFam Peptidyl-prolyl cis-trans isomerase CWC27 homolog 1 179 - -
Phco2g00524 491 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Phco2g00524 491 SUPERFAMILY Cyclophilin-like 14 184 IPR029000 -
Phco2g00524 491 MobiDBLite consensus disorder prediction 436 459 - -
Phco2g00524 491 MobiDBLite consensus disorder prediction 341 367 - -
Phco2g00524 491 Gene3D - 2 182 IPR029000 -
Phco2g00524 491 MobiDBLite consensus disorder prediction 438 459 - -
Phco2g00524 491 MobiDBLite consensus disorder prediction 235 394 - -
Phco2g00524 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 125 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Phco2g00524 491 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 113 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g00524 Phco-Chr2 4895470 4905631 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g00524 2 4895470 4905631 Phco2g00524 2 4895470 4905631 ECH