Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g03332 ATGAGCTTGTCCAAGAAAGGATCCCAAATAGACACAAAACTAAGCGCCCCAAACAAGGCAATCGCTTTGAATCCAAATGCAGCAGAGTTTATTCCTTTTGCCCTCAGATCATTGCCATCTGGAAGTGCCAGCACAGTAGATGCAACAACAAGGCTCAGTACTGCTGGATCTCTTGGGAAAGCAGTTTTAGATCGATCAGAATCATCCATTTCAAATAATTCTGATGATGAGGCCCACCAGTACTGGCGATGTCAACTCCCTGATGATATCACCCCTGACTTCAAGGTCATGGGAGAAGATGAATCCCAAGATCTTAACAACCTCTCTTTAGGAGGATTGTCTATACATGATGATAATGAATCCTCAAGGTTTCCTTCTTCTAAGGGAAGTAGATATATATTAAATGAGCAGCAGGAATTATCTCAACAGCACCTTAATGGCAATAACTTTGCTGATAAATTAAGGTTTTCCAATTCAACCTACAGGGAGGAAACATCTTCAGCAAGCTTTTTGAACACATTAGCAAAGCCTTGGGACAGGCAAATTGGGAATACCAACCTGCATGTTAGCAGTGGTCAAGAGGCACTTGTTTATGATGACAACACTGGGCATGGATTCTTAAATGATGTTTTGGCTGAGAATGCTATTGTGGATGATACTGATTTTAACCCCTTGGAGTTTTTAGCTTCTCTATTCCCTGGTTTTGCGTCAGAAAGCCTTGCTGAAGTTTACTTTGCCAATGGATGTGATTTACAGATGACCATTGAGATGCTCACTCAGTTAGAGATTCAAGTTGATGGTAGTTTCAGTCAGAACGCGAGTCCAAAGACTCTGTCAGCTCCCAATCTGAGTGCAATGGATTTTCCAGCACTTACTTCCCCAAATGGCCAGACTACTACTGCAAAATATGCTGCAGATAATGTTCAACAAAGCGGCAATCCTTACTTATCATCTGACAAAGACATGCTCATGTTCAAATCTAGCTCTTCTATTCCGTCTAGAGGTGCTATCGACTTTGCTTCAGCTGTCAGGAAATTGGCTTCTCAGGATTCTGGTATATGGAAGTATGATAAAAATGGTTCTGTTGATGCATCCACTGGGTCAAGTAGGAGTTTAAATGTTCTGGCTAGTGCCTACAACGGTGGACAGGGGAGAGCTAACTTTGGTGATAGGTTACAGAACCGTGGTTCTGCTCGGGCTGCTCCTGTTTGGCTTGAAACCGGTGACGCAGTTGCAAATATGTATTCTGAGCTGCGGGAGGAGGCTCGTGATCATGCACGCTTACGTAATGCATATTTTGAGCAGGCACGGCAAGCCTACCTTATTGGCAATAAGGCCCTTGCAAAGGAGCTAAGTGTTAAAGGGCAACTGCACAACATGCATATGAAAGCAGCTCACGATAAAGCTCAAGAATCTATTTACCGCCAAAGGAATCCTGTTGCACCGGAGATGCAGGTTAATGGAAGAGGACACGAGAGAATGATAGACCTACATGGCCTGCATGTAAGTGAAGCCATTCACGTGCTGAAACATGAGTTGAGTGTGCTAAGAAGCACAGCCAGAGCTGCTGAGCAGCGATTGCAGGTTTATATCTGTGTTGGTACTGGTCACCATACCAGGGGTTCACGCACTCCTGCGAGACTTCCTATAGCTGTACAGCGTTATCTACTCGAAGAAGAGGGCCTTGATTTCACAGAACCACAGCCAGGTCTCATCCGTGTTGTGTTATATTGA 1734 0.4418 MSLSKKGSQIDTKLSAPNKAIALNPNAAEFIPFALRSLPSGSASTVDATTRLSTAGSLGKAVLDRSESSISNNSDDEAHQYWRCQLPDDITPDFKVMGEDESQDLNNLSLGGLSIHDDNESSRFPSSKGSRYILNEQQELSQQHLNGNNFADKLRFSNSTYREETSSASFLNTLAKPWDRQIGNTNLHVSSGQEALVYDDNTGHGFLNDVLAENAIVDDTDFNPLEFLASLFPGFASESLAEVYFANGCDLQMTIEMLTQLEIQVDGSFSQNASPKTLSAPNLSAMDFPALTSPNGQTTTAKYAADNVQQSGNPYLSSDKDMLMFKSSSSIPSRGAIDFASAVRKLASQDSGIWKYDKNGSVDASTGSSRSLNVLASAYNGGQGRANFGDRLQNRGSARAAPVWLETGDAVANMYSELREEARDHARLRNAYFEQARQAYLIGNKALAKELSVKGQLHNMHMKAAHDKAQESIYRQRNPVAPEMQVNGRGHERMIDLHGLHVSEAIHVLKHELSVLRSTARAAEQRLQVYICVGTGHHTRGSRTPARLPIAVQRYLLEEEGLDFTEPQPGLIRVVLY. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g03332 577 SMART SMR_2 492 577 IPR002625 -
Seca8g03332 577 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 577 - -
Seca8g03332 577 Pfam Smr domain 495 563 IPR002625 -
Seca8g03332 577 CDD CUE_CID7_like 223 264 IPR041806 -
Seca8g03332 577 Pfam Domain of unknown function (DUF1771) 415 478 IPR013899 -
Seca8g03332 577 Gene3D - 462 577 IPR036063 -
Seca8g03332 577 Coils Coil 506 526 - -
Seca8g03332 577 SMART DUF1771_2 414 479 IPR013899 -
Seca8g03332 577 SUPERFAMILY SMR domain-like 493 576 IPR036063 -
Seca8g03332 577 ProSiteProfiles Smr domain profile. 495 577 IPR002625 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g03332 Seca-Chr8 95529287 95534949 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g03332 - - gmx:100796128 1000.35